PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G443200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 265aa    MW: 28364 Da    PI: 10.3828
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G443200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix262.4e-082094271
            trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr 71
                        W++ e+ aL++a   ++ r r g+l+ ++W++ ++++     +++   r+  qCk++ + l+kr ++++++ k++
  Sevir.9G443200.1.p 20 WSDGETSALLDAWGPRHLRARGGALRPADWRACAAAVtsrraADGRAPRTVDQCKNRVDYLKKRLRAERARPKGG 94
                        *************************************9999888889*********************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-131995No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSTRRRPLP PPPAWTPEPW SDGETSALLD AWGPRHLRAR GGALRPADWR ACAAAVTSRR  60
AADGRAPRTV DQCKNRVDYL KKRLRAERAR PKGGPPPPPP VSGWLDRLRA LLHLAPSAPP  120
GFAHRPAGAT TTAKVKEEDE NDDDHHHHKA SGGAPLPRDW PPVPKRPRTA VSLSPLSAAS  180
GEHPEGGGRS CVGPEVAAAL DRLAGTYERV EAAKQREATR LEERRLEAMR DLEIERMRLL  240
VDVAVTSSVG VDGAAAAATA GGDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G443200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698074.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A368SS550.0A0A368SS55_SETIT; Uncharacterized protein
STRINGGRMZM2G452695_P011e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-10sequence-specific DNA binding transcription factors