PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G421600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 364aa    MW: 39312.2 Da    PI: 8.8152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G421600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81.1e-53101371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yL++++ +  +++ ++i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Sevir.9G421600.1.p  10 LPPGFRFHPTDEELILHYLRNRAGNAGCPV-DIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKP 99 
                         79****************************.99***************888889************************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl
  Sevir.9G421600.1.p 100 IHSSaTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 137
                         **9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-656170IPR003441NAC domain
PROSITE profilePS5100562.23110170IPR003441NAC domain
PfamPF023651.4E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIMANPATML PPGFRFHPTD EELILHYLRN RAGNAGCPVD IIADVDIYKF DPWDLPSRAA  60
YGDKEWYFFS PRDRKYPNGI RPNRAAGSGY WKATGTDKPI HSSATGESVG VKKALVFYKG  120
RPPKGTKTNW IMHEYRLAAD AQAGHTYRPM KFRNASMRLD DWVLCRIYKK TSHASPMAVP  180
PLSDHEQDEP CGGFDENPYA ASSSAAMLVQ GAYPALQAAA GAAQRMPRIP SLSELFNDPS  240
LAHFFEDAGS VVPDMARLDQ QHHHHQHAGA TLLGHPVTSQ LLVNSMHGQT IPQMDSSAST  300
SAAAGDGAAG KRKRSSETST NAGTASAAKK PNGSCFGATF QIGNGLQGSL GHHMLLHSNT  360
GMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-741017420172NAC domain-containing protein 19
3swm_B5e-741017420172NAC domain-containing protein 19
3swm_C5e-741017420172NAC domain-containing protein 19
3swm_D5e-741017420172NAC domain-containing protein 19
3swp_A5e-741017420172NAC domain-containing protein 19
3swp_B5e-741017420172NAC domain-containing protein 19
3swp_C5e-741017420172NAC domain-containing protein 19
3swp_D5e-741017420172NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G421600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984512.10.0NAC domain-containing protein 72
TrEMBLK4ABP60.0K4ABP6_SETIT; Uncharacterized protein
STRINGSi036303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-83NAC domain containing protein 47