PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G396300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26583.1 Da    PI: 5.6789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G396300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.7e-21955147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k+ie++  r+v fskRr+g++KKA ELS+LC+a va+++fs++g+ +
  Sevir.9G396300.1.p  9 KKIESEEARSVCFSKRRAGMFKKAAELSILCGAMVAIVVFSPSGRPF 55
                        68*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.848161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-26278IPR002100Transcription factor, MADS-box
CDDcd002656.76E-34271No hitNo description
PRINTSPR004048.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRQKIEMKK IESEEARSVC FSKRRAGMFK KAAELSILCG AMVAIVVFSP SGRPFSFGSP  60
SFKAVYNRFR TLIDPAISGE SCDGSSEETN TTHELLEYSE LEQSIEGEKK RKKRLDETII  120
ERDIDARVMD LLTTEVYSSG LDDLQEFHKK LVAIQDIVKE KIKQVMQEER HPTRPYPPAF  180
IDLVSKYMLD MQIDTHISST TLNSNHTAAD GLDVNGPSTS SVHAVGTSVN YPSNQLDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114EKKRKKRL
2108112KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G396300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986970.11e-176agamous-like MADS-box protein AGL29
TrEMBLK4AJ951e-174K4AJ95_SETIT; Uncharacterized protein
STRINGSi038960m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-14AGAMOUS-like 6