PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G395000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 39845.6 Da PI: 8.931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.8 | 4e-31 | 31 | 176 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 lppG++F Ptd elv +yL++++++++l+l ++ + +i++++P +L +k+++ +e++w+fF+kr++k++ g+r+nrat +g W+atg+ Sevir.9G395000.1.p 31 LPPGYHFLPTDAELVLHYLRPRLTNHQLPL-PTFFDERILHYHPDRLIEKYREyGEDRWFFFTKRERKHEGGSRPNRATPdNGHWNATGSP 120 79**************************99.5577789*********8544443778********************87659********* PP NAM 90 kevlskkgelvglkktLvfy...................kgrapkgektdWvmheyr 127 +++ s +++lvg +tLvfy k +a kg+kt+W+m ey+ Sevir.9G395000.1.p 121 RRIRS-GRALVGRVRTLVFYeaprrkkttheeagpppvgKDKADKGVKTEWTMYEYE 176 *****.999***********8888877777776666666689**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-38 | 26 | 206 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.151 | 31 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-18 | 32 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEDDTPAAAA GAASASTAAA CSGPGRFVVN LPPGYHFLPT DAELVLHYLR PRLTNHQLPL 60 PTFFDERILH YHPDRLIEKY REYGEDRWFF FTKRERKHEG GSRPNRATPD NGHWNATGSP 120 RRIRSGRALV GRVRTLVFYE APRRKKTTHE EAGPPPVGKD KADKGVKTEW TMYEYESLAS 180 EEEFVATCAD GNAKMDVIVL CTIQKKKQKT KHGEESKEKI TRTKRKTREK SQDAEQGGCA 240 GGKKARKKRM RAEEAQKEDI TLSETEAPGQ ELAVEAYTGV ASFTVDPNAD TSHCFFSNTS 300 SPVSTPPQET MMAAAARGDN NHISVHPSNA AMGKLCLRSD SASASRGTVH STLDLPAAYV 360 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-25 | 29 | 209 | 13 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G395000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243249 | 6e-54 | AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467804.1 | 2e-78 | NAC domain-containing protein 67 | ||||
TrEMBL | A0A368SQF7 | 0.0 | A0A368SQF7_SETIT; Uncharacterized protein | ||||
STRING | Si039216m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15867 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 5e-33 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G395000.1.p |