PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G349900.5.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 153aa MW: 17781.1 Da PI: 8.9796

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G349900.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	8	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL++ k+ e+++wyfFs +d+ky+tg+r+nrat +g+Wkatg+ Sevir.9G349900.5.p 8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGR 97 69**************************.9***********953433332556**************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+v ++ +g l+g++ktLvfy+grap+g+ktdW+mheyrle Sevir.9G349900.5.p 98 DKAVRDSkqGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 140 998667778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-57	4	144	IPR003441	NAC domain
PROSITE profile	PS51005	55.444	8	152	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	9	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MVIMESCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDVDLYRIEP WDLQEHCKIG 60 YEEQSDWYFF SYKDRKYPTG TRTNRATLTG FWKATGRDKA VRDSKQGGGL IGMRKTLVFY 120 TGRAPNGRKT DWIMHEYRLE TDENAAPQAR ST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-48	5	139	12	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G349900.5.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075086	0.0	KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661306.1	1e-108	NAC domain-containing protein 105
Refseq	XP_022678690.1	1e-108	NAC domain-containing protein 105
Refseq	XP_022678691.1	1e-108	NAC domain-containing protein 105
Swissprot	Q9SL41	2e-89	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A368SNQ7	1e-111	A0A368SNQ7_SETIT; Uncharacterized protein
STRING	Pavir.Ia02924.1.p	1e-104	(Panicum virgatum)
STRING	Si039467m	1e-105	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	9e-92	vascular related NAC-domain protein 1

Link Out ? help Back to Top
Phytozome	Sevir.9G349900.5.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]