PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G344100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 268aa    MW: 29429.9 Da    PI: 4.8253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G344100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09139183348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT+ E+ l++ +   + g+ W++ +r++ + +t+ q+ s++qky+
  Sevir.9G344100.1.p 139 KWTEYEHRLFLAGLPFYRGN-WNAMSREFLTSKTASQIASHYQKYR 183
                         8*****************99.************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-10134187IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-10135185IPR006447Myb domain, plants
PROSITE profilePS512939.107135187IPR017884SANT domain
SMARTSM007177.8E-5136185IPR001005SANT/Myb domain
PfamPF002493.2E-6139183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-6139184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MHHDGYAAAT AAPPPALAAS PAPEPEPEQE PKWTRRDDKF LELLLFTRNT VSLHVTSGII  60
GKTPVQIHQR CTFMFAELSH VLESLEVLTP PVWDMEIAAM AAAVEEEVVP EAVVPAAPPA  120
AERAVGAGGD KRNKKAAEKW TEYEHRLFLA GLPFYRGNWN AMSREFLTSK TASQIASHYQ  180
KYRNREKQRE HDNCKRASIH DITEPGIAAA FAVSGGEAAA WKGELPRSEA SAWRQENEPW  240
EPIESGEDGL SPVEEFPGED DPGTLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G344100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986850.11e-158transcription factor SRM1
TrEMBLK4AKN91e-157K4AKN9_SETIT; Uncharacterized protein
STRINGSi039462m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.27e-15MYB family protein