PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G273700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44303.1 Da PI: 4.7208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.2 | 1.2e-17 | 32 | 141 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +deelv ++L+++ ++++l+ +v++ +d v+P+d+ + wy +s ++ y + ++ r++k+gyWk +++ + ++ Sevir.9G273700.3.p 32 SDEELV-RFLAERKAEDPLPQ-DVLAGLDFSLVDPRDFT------VDMWYLnWSDDQQPYDSAENGIRKAKNGYWKPVESSRIP-T-STGI 112 79****.99999999999999.99**************6......356875267777778889999999*******99886655.4.4779 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+k +L fy+g+a+ g++t W+mhey++ Sevir.9G273700.3.p 113 LGMKIILEFYEGQASCGKRTGWMMHEYQV 141 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-26 | 18 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.248 | 23 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-10 | 32 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MSCVSCCRTT MWPPDPLLKL AALDISIRDS WSDEELVRFL AERKAEDPLP QDVLAGLDFS 60 LVDPRDFTVD MWYLNWSDDQ QPYDSAENGI RKAKNGYWKP VESSRIPTST GILGMKIILE 120 FYEGQASCGK RTGWMMHEYQ VEQNDEANLP QDYKSLCKVF FQGDNWDSAE SQPNSLNVDA 180 PNDNLESYLQ YLAKLEEPKF DKVTPDANEQ DVSSKRQFEQ KPLGAVDYID VIATGDYLEL 240 NDLLSSEASA STSENSSKRS MISEEYFDSD ALLGEILKGS NTTDGQNQDH KFSIAAPTKS 300 ANVVLGPSKQ GLVQIHDNNV MVPGTSQKKP PPEGDRGQHS SQGFQHQSPG SSCFPSSHVK 360 RSRSNSSSSS QSSIKSQKER STSKFGKIGK KYCCFGSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G273700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983252.1 | 0.0 | protein BEARSKIN2 | ||||
TrEMBL | A0A368SL50 | 0.0 | A0A368SL50_SETIT; Uncharacterized protein | ||||
STRING | Si036071m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 4e-15 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G273700.3.p |