PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G273700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 43686.3 Da PI: 4.6242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.3 | 1.1e-17 | 22 | 131 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +deelv ++L+++ ++++l+ +v++ +d v+P+d+ + wy +s ++ y + ++ r++k+gyWk +++ + ++ Sevir.9G273700.2.p 22 SDEELV-RFLAERKAEDPLPQ-DVLAGLDFSLVDPRDFT------VDMWYLnWSDDQQPYDSAENGIRKAKNGYWKPVESSRIP-T-STGI 102 79****.99999999999999.99**************6......356875267777778889999999*******99886655.4.4779 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+k +L fy+g+a+ g++t W+mhey++ Sevir.9G273700.2.p 103 LGMKIILEFYEGQASCGKRTGWMMHEYQV 131 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-26 | 12 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.248 | 13 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-10 | 22 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MWPPDPLLKL AALDISIRDS WSDEELVRFL AERKAEDPLP QDVLAGLDFS LVDPRDFTVD 60 MWYLNWSDDQ QPYDSAENGI RKAKNGYWKP VESSRIPTST GILGMKIILE FYEGQASCGK 120 RTGWMMHEYQ VEQNDEANLP QDYKSLCKVF FQGDNWDSAE SQPNSLNVDA PNDNLESYLQ 180 YLAKLEEPKD VLQFDKVTPD ANEQDVSSKR QFEQKPLGAV DYIDVIATGD YLELNDLLSS 240 EASASTSENS SKRSMISEEY FDSDALLGEI LKGSNTTDGQ NQDHKFSIAA PTKSANVVLG 300 PSKQGLVQIH DNNVMVPGTS QKKPPPEGDR GQHSSQGFQH QSPGSSCFPS SHVKRSRSNS 360 SSSSQSSIKS QKERSTSKFG KIGKKYCCFG SF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G273700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983252.1 | 0.0 | protein BEARSKIN2 | ||||
TrEMBL | A0A368SL50 | 0.0 | A0A368SL50_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368SMY5 | 0.0 | A0A368SMY5_SETIT; Uncharacterized protein | ||||
STRING | Si036071m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 4e-15 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G273700.2.p |