PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G273700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 403aa    MW: 44758.6 Da    PI: 4.6742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G273700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-173214110128
                 NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                         +deelv ++L+++ ++++l+  +v++ +d   v+P+d+        + wy  +s  ++ y + ++  r++k+gyWk   +++   + ++  
  Sevir.9G273700.1.p  32 SDEELV-RFLAERKAEDPLPQ-DVLAGLDFSLVDPRDFT------VDMWYLnWSDDQQPYDSAENGIRKAKNGYWKPVESSRIP-T-STGI 112
                         79****.99999999999999.99**************6......356875267777778889999999*******99886655.4.4779 PP

                 NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                          g+k +L fy+g+a+ g++t W+mhey++
  Sevir.9G273700.1.p 113 LGMKIILEFYEGQASCGKRTGWMMHEYQV 141
                         ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-2618162IPR003441NAC domain
PROSITE profilePS5100527.24823162IPR003441NAC domain
PfamPF023651.3E-1032141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSCVSCCRTT MWPPDPLLKL AALDISIRDS WSDEELVRFL AERKAEDPLP QDVLAGLDFS  60
LVDPRDFTVD MWYLNWSDDQ QPYDSAENGI RKAKNGYWKP VESSRIPTST GILGMKIILE  120
FYEGQASCGK RTGWMMHEYQ VEQNDEANLP QDYKSLCKVF FQGDNWDSAE SQPNSLNVDA  180
PNDNLESYLQ YLAKLEEPKD VLQFDKVTPD ANEQDVSSKR QFEQKPLGAV DYIDVIATGD  240
YLELNDLLSS EASASTSENS SKRSMISEEY FDSDALLGEI LKGSNTTDGQ NQDHKFSIAA  300
PTKSANVVLG PSKQGLVQIH DNNVMVPGTS QKKPPPEGDR GQHSSQGFQH QSPGSSCFPS  360
SHVKRSRSNS SSSSQSSIKS QKERSTSKFG KIGKKYCCFG SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G273700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983252.10.0protein BEARSKIN2
TrEMBLA0A368SL500.0A0A368SL50_SETIT; Uncharacterized protein
STRINGSi036071m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-15NAC domain containing protein 2