PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G273500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 370aa    MW: 40980.9 Da    PI: 4.5362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G273500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.52e-13156972128
                 NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +  +r+tk+gyWk   +++ + + +++ +g+k tL fy+g+a  g+kt Wvmhey++
  Sevir.9G273500.3.p  15 DGITRKTKNGYWKFMDSSR-IPT-STAIIGVKITLEFYEGHALCGTKTGWVMHEYQV 69 
                         456899*******998865.444.5899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.613190IPR003441NAC domain
SuperFamilySSF1019413.14E-201290IPR003441NAC domain
PfamPF023652.2E-81669IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKLSDDQHPY NSSEDGITRK TKNGYWKFMD SSRIPTSTAI IGVKITLEFY EGHALCGTKT  60
GWVMHEYQVE HNEEANLPQD YKSLCKVFLK GEKNISDEIQ QNSDNADSPK DSFKAYLQYL  120
AKIEEPKQPV DADKQEISSS KGQNEQNTQH IADGIDIDNV LANEDYIELN DLLYDDDAVR  180
NDALTPEDLD DLLIPQASAP TSTNSSKQSS AVHDALEDLD DLLTPEASAS TSANSSKRSM  240
FSEECFDCDA FLREILKDSN SNEGENKDNK FSIAAPTNLV NVVISPSEQG LAKIHDDNAI  300
VAGTSQHEPF PGGDRDEHSS SGFKQRSPSK SSCFPSRSDS SQSNIKCRRE QSSSKFGKIM  360
KKYSCFRSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G273500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678496.10.0NAC domain-containing protein 7
TrEMBLK4ABK80.0K4ABK8_SETIT; Uncharacterized protein
STRINGSi036265m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-12NAC domain containing protein 17