PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G204900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 251aa MW: 25159.3 Da PI: 9.2727

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G204900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.5	1.2e-32	81	135	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC+s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ Sevir.9G204900.1.p 81 PRQCPRCQSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 135 679**********************************************976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.3E-30	82	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.068	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-17	87	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MPSSFLASAS SSASSPLSYL IPAASRPPPP PLVMGQGYSV DGLAGVPTGG VVVDATSAAA 60 VAPPRPGARN PGHPPLPRPP PRQCPRCQSA NTKFCYYNNY SRTQPRYLCK ACRRHWTEGG 120 TLRDVPVGGG RKNRRGGSKA GAAAAKASAS TSAAAAAATQ GGSVAVGADT FPDLLRQLMQ 180 FQPTALAGGG YAIDLSAWQQ MAAATAPPQG AGDVSALGGA AAAAAEANCG ALQYWAGWQP 240 DDMPGLDGPC *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G204900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727985	1e-125	KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982733.1	2e-99	dof zinc finger protein 4
TrEMBL	A0A368SIQ3	4e-98	A0A368SIQ3_SETIT; Uncharacterized protein
STRING	Si040117m	1e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-18	Dof family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G204900.1.p