PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 548aa    MW: 61643.4 Da    PI: 8.9337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.2e-1741126798
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +  +++++ +++p++f++++ gk   s t++le+ +g  ++v++  + + +++vl+ GW+ Fv+a++++e+D+++F+ +++s f  +v ++
  Sevir.9G164900.1.p  41 RMTANTKHSMTIPNRFLKHFAGK--LSGTIKLESANGSLYDVEV--TERYRKMVLRHGWEAFVDAHHIEENDSLLFRNIENSVF--KVLIL 125
                         556678889********888877..677****************..9999999************************8888888..77776 PP

                         - CS
                  B3  98 r 98 
                         +
  Sevir.9G164900.1.p 126 D 126
                         5 PP
2B336.96.5e-122713511899
                         --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + k++a +h   ++++  +tl    ++++W  k+  rk ++ y+l++ W +Fv++n+++e+D+++F  ++  +f++ v ++r+
  Sevir.9G164900.1.p 271 ITKEYAFAHF--PHGNANVTLHRpGKSKKWHPKFYTRKDRSVYMLRGQWLDFVRDNHVQERDICLFLPTNGGRFTFIVYLLRA 351
                         5566665663..345567999995566*******54666666*************************8877999999999886 PP
3B347.33.6e-154765442999
                         -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         + ++++  ++ +  g+ W++k+ +++ +++ +l++GW +Fv+ ngL++gD+++F+l+++ ++ +++v+++++
  Sevir.9G164900.1.p 476 P-AKGQ-TMVLHCLGKIWKIKMVFQRVRRW-FLSGGWPKFVRGNGLRAGDICLFELKKNqKKLTMKVHIISR 544
                         3.3443.44566689*******99999877.5899**********************999********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2032130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-2132130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.78835128IPR003340B3 DNA binding domain
SMARTSM010191.1E-937128IPR003340B3 DNA binding domain
CDDcd100175.25E-1837126No hitNo description
PfamPF023627.1E-1542125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-15245346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-17247350IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-13253350No hitNo description
PROSITE profilePS5086310.024254352IPR003340B3 DNA binding domain
SMARTSM010190.0054257352IPR003340B3 DNA binding domain
PfamPF023622.6E-10271351IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18444544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-17444543IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-15448543No hitNo description
SMARTSM010196.1E-8450545IPR003340B3 DNA binding domain
PfamPF023623.3E-13469544IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294488545IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MSIVDMGRND GSRMKKPCDC CQKYLDHLDE KNQTMSCFLM RMTANTKHSM TIPNRFLKHF  60
AGKLSGTIKL ESANGSLYDV EVTERYRKMV LRHGWEAFVD AHHIEENDSL LFRNIENSVF  120
KVLILDSDGC EKMFCCSGIK TTPNVGKRSV DSVDISSSSQ YDTTESSGSE RAARCVKGSS  180
NRHGKTSKMA VTSSSSGGSG DDIPSENESF ESDDLQTPPG ADYVISCRSH LSEEQKERVI  240
ALIQEIQPEI TVYIAVMQKC HVHPPNPFVA ITKEYAFAHF PHGNANVTLH RPGKSKKWHP  300
KFYTRKDRSV YMLRGQWLDF VRDNHVQERD ICLFLPTNGG RFTFIVYLLR ATATHSGRRG  360
AGFQRVGPCL AAPSANMASE IHKEEPTDGE HVSLESDMHE ISHESLESGQ DSGGPSQPPY  420
ILPGKSRLSK SQKKIVEERV RDIQCEVPIY VAIMTKSSLA YMQEFGSRYA AAVHLPAKGQ  480
TMVLHCLGKI WKIKMVFQRV RRWFLSGGWP KFVRGNGLRA GDICLFELKK NQKKLTMKVH  540
IISREQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHL40.0A0A368SHL4_SETIT; Uncharacterized protein
STRINGSi039499m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-12B3 family protein