PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 544aa    MW: 61855.4 Da    PI: 8.4739
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3542.9e-17401211097
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +++++ +++p++f++++  k   s t++le+++g  ++v++    + +++vl+ GW+ Fv+ang++e+Df++F+++++s+f   v ++
  Sevir.9G164600.1.p  40 TSSKHSMIVPNRFLKHFARK--LSGTIKLESPDGSLYDVEV--AERFNKVVLRHGWEAFVDANGIEENDFLLFRHTEQSCF--EVLIL 121
                         4566789*******666654..667****************..99999**************************9998999..66555 PP
2B340.55e-13251347499
                         E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         ++ +s+v    + l lpk++a++h     e++ +tl+   ++++W  k+ yr k+ r ++l++ W +Fv++n+++ gD++++  ++  ++f
  Sevir.9G164600.1.p 251 IMRKSHVKGPsAFLALPKEYASAHFPH--ETTNITLQRpGKSKKWHPKF-YRSKDIRlHMLRGQWLDFVRDNHVQLGDICLLLPTKGvRKF 338
                         55555555433789**********744..5567999995666*******.66666668*************************88777999 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                          ++v+++r+
  Sevir.9G164600.1.p 339 AFTVHLLRT 347
                         999999986 PP
3B348.31.8e-154605381697
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         l ++ ++a+++  + ++s   ++    g+sW+ ++ +r +s++++  +GW +Fv +ngL++gD+++F+l+++ s+ +++v+++
  Sevir.9G164600.1.p 460 LEISARYAAANLPDRRQS---MILRYMGKSWRTQMVVRSGSRWFL-CEGWFQFVCDNGLRVGDVCLFELEKNeSKLTMTVHII 538
                         667788888884443443...4455699*******8888888775.55**********************9989999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-2229126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-2129126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.60631124IPR003340B3 DNA binding domain
CDDcd100173.04E-1933122No hitNo description
SMARTSM010198.4E-1134124IPR003340B3 DNA binding domain
PfamPF023622.0E-1540120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18241346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19241347IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-11248347IPR003340B3 DNA binding domain
SMARTSM010198.0E-5248348IPR003340B3 DNA binding domain
CDDcd100176.58E-18248343No hitNo description
PROSITE profilePS5086311.998249348IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-19438538IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-21438538IPR015300DNA-binding pseudobarrel domain
CDDcd100176.33E-19443536No hitNo description
PROSITE profilePS5086312.167445541IPR003340B3 DNA binding domain
SMARTSM010193.0E-9445541IPR003340B3 DNA binding domain
PfamPF023622.3E-13459538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MARTRSGSRT KKSCDCCKRY MDHLDGKDQK MNYFLRRMTT SSKHSMIVPN RFLKHFARKL  60
SGTIKLESPD GSLYDVEVAE RFNKVVLRHG WEAFVDANGI EENDFLLFRH TEQSCFEVLI  120
LDSDGCEKVF PCTGIVNIPS FKERSVDSVD ISSSSHDETT ESSESERFTR CQKGSSYHRR  180
KTAKVTATSS SSKESGDIPS ESESYESDDL QTSPGDDYVL CSRSYLSEAQ EERVVALIRE  240
IQPKVTAFVA IMRKSHVKGP SAFLALPKEY ASAHFPHETT NITLQRPGKS KKWHPKFYRS  300
KDIRLHMLRG QWLDFVRDNH VQLGDICLLL PTKGVRKFAF TVHLLRTTAP HSRVRTSFQS  360
VSSCHGISSP KMASVVHIKE ETTDEEYVSS EGGMHGISNK YLENKDPGGS FEPPYIISVR  420
SCLSESQKKI VEEKVRAIQC EVPICVAIMN KCSVSIRYEL EISARYAAAN LPDRRQSMIL  480
RYMGKSWRTQ MVVRSGSRWF LCEGWFQFVC DNGLRVGDVC LFELEKNESK LTMTVHIIFS  540
EQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982415.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLK4A8400.0K4A840_SETIT; Uncharacterized protein
STRINGSi035046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]