PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G148400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 133aa    MW: 13919.2 Da    PI: 9.7976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G148400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.6e-2243100258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 
                         +Dg++W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+ ++ ++Yeg H+h
  Sevir.9G148400.1.p  43 EDGHEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 100
                         7******************************************985789********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.63737103IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-2438103IPR003657WRKY domain
SuperFamilySSF1182906.28E-2139103IPR003657WRKY domain
SMARTSM007742.4E-2442102IPR003657WRKY domain
PfamPF031061.1E-2043100IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MASSSQHPAA IGSGGGDKNQ AEDAAAVPAX AASEAGGQLV MPEDGHEWKK YGQKFIKNIQ  60
KIRSYFRCRH RLCGAKKKVE WHPSDPSGAL RVVYEGAHQH GSPSPPSSAA GGASNRYELG  120
AQIFGGARSQ SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G148400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706332e-73EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982253.18e-92probable WRKY transcription factor 33
SwissprotO229004e-12WRK23_ARATH; WRKY transcription factor 23
TrEMBLK4AGJ42e-90K4AGJ4_SETIT; Uncharacterized protein
STRINGSi038001m3e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-13WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]