PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G148300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 130aa    MW: 13976.6 Da    PI: 9.95
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G148300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.72e-223996258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58
                        +Dgy+W+KYGqK +k+ +  rsY+rC ++ C vkkkve   +dp   + i+Yeg H+h
  Sevir.9G148300.1.p 39 QDGYEWKKYGQKFIKNIQKNRSYFRCRHKLCGVKKKVEWHPSDPAGdLRIVYEGAHQH 96
                        7******************************************975499********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.4213399IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-233497IPR003657WRKY domain
SuperFamilySSF1182901.44E-203497IPR003657WRKY domain
SMARTSM007742.5E-223898IPR003657WRKY domain
PfamPF031062.7E-203996IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MASTSQPAAI GKGEEKRKEE QALPSAAGDG SQLQLVMPQD GYEWKKYGQK FIKNIQKNRS  60
YFRCRHKLCG VKKKVEWHPS DPAGDLRIVY EGAHQHGSGA APSSAKGAAA GASNQYELGA  120
QYFGGARSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G148300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706334e-74EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986337.22e-91probable WRKY transcription factor 71
TrEMBLA0A368SIG95e-90A0A368SIG9_SETIT; Uncharacterized protein
STRINGSi038955m5e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-14WRKY DNA-binding protein 57