PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G076700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 379aa    MW: 38495.6 Da    PI: 7.9344
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G076700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.5e-32113166255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sevir.9G076700.1.p 113 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 166
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
Gene3DG3DSA:1.10.10.607.2E-29111167IPR009057Homeodomain-like
SuperFamilySSF466899.5E-16111167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23113166IPR006447Myb domain, plants
PfamPF002495.8E-8114165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLQRNLPNLS LGISPPAASS AAACDALAVA RPPLAEPSTA PHAEGSGEVG FFANPSPVAE  60
PPGLSLGLGT PAARGGDAAG RRGHLEPQGC AFKRAATRAS LPGGSTKRSA RAPRMRWTTA  120
LHARFVHAVE LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKST DRSLHIATGE  180
ALPLQRTTAT GMEAAAAAAA AGGGAAAGGG VVVVPVPAAC DDMVGICSSP SAGSAPPAAA  240
TTSAAHFLYA PPATAPLAAA PPPPPPIPPR TDHAPGVLGK GAAIVDSAHR CQKHNFSPPA  300
LQDTQAAQEE VNRHLAMGLH ARSEAVATNC SSPASSSSPS LASVELLADD MYAPNLEISL  360
GRQDWSMERP EELSLKYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16114168357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16114168458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G076700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0651241e-151BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981643.10.0probable transcription factor RL9
TrEMBLK4ABD00.0K4ABD0_SETIT; Uncharacterized protein
STRINGSi036187m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.25e-37G2-like family protein