PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G037900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 245aa    MW: 25905.6 Da    PI: 10.849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G037900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1783132255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr++  +grW+AeIrdp     +  +r++lg+f +aeeAa+a++ a  +++g
  Sevir.9G037900.2.p  83 RFRGVRRRA-WGRWAAEIRDP-----HgsRRIWLGTFNSAEEAAAAYDVANIRFRG 132
                         69****777.**********7.....335*********************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-2783140IPR001471AP2/ERF domain
SMARTSM003803.0E-3183146IPR001471AP2/ERF domain
PROSITE profilePS5103223.34183140IPR001471AP2/ERF domain
PfamPF008477.0E-1283132IPR001471AP2/ERF domain
CDDcd000185.26E-2983142No hitNo description
PRINTSPR003671.8E-98495IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2184141IPR016177DNA-binding domain
PRINTSPR003671.8E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGPNPSLQQL AAAAAEVAMT ASEPPPPPRA RVVRILVHDA DATDSSSSED EAPPPPRRAR  60
VGSSSVGARR RVMEAAGANP PVRFRGVRRR AWGRWAAEIR DPHGSRRIWL GTFNSAEEAA  120
AAYDVANIRF RGASAHTNFP PARYLLPLEP AKPIISLTPG PGKVITLPPV PVKSTVPLQV  180
KVKEEGGSCD GQGEEGSSEV KAFAPRPMWE MIPGKRKKRP GCGSGTRLRA IHAASVCVEE  240
VGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15831401472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G037900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981291.11e-173ethylene-responsive transcription factor CRF1
TrEMBLK4AEA21e-172K4AEA2_SETIT; Uncharacterized protein
STRINGSi037209m1e-173(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.19e-12ERF domain protein 10