PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G033300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 187aa MW: 19832.2 Da PI: 8.3752 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F++ L H +H Sevir.9G033300.1.p 60 FVCKTCGRAFTSFQALGGHRTSH 82 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Sevir.9G033300.1.p 121 HECHICGLGFEMGQALGGHMRRH 143 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 55 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.87E-6 | 56 | 86 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.9E-10 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-5 | 119 | 146 | No hit | No description |
Pfam | PF13912 | 1.8E-10 | 121 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.619 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.49 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKHPRDQQEE VSLALSLSTT DSSTTTSDSA TAGSPASAAA SNKRARRRGP VVATSGEGEF 60 VCKTCGRAFT SFQALGGHRT SHLRGRHGLE LGVGAKALKQ HKAADAAGKG AGDKQEQRPQ 120 HECHICGLGF EMGQALGGHM RRHREEMGAA EAADAWVWRS VERLPEELEL RRAAAAEPPV 180 LLELFA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G033300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957402 | 5e-62 | EU957402.1 Zea mays clone 1590997 ZFP16-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981259.1 | 1e-132 | zinc finger protein ZAT12 | ||||
TrEMBL | K4AFL5 | 1e-131 | K4AFL5_SETIT; Uncharacterized protein | ||||
STRING | Si037672m | 1e-132 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G033300.1.p |