PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G024700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 153aa    MW: 16684.1 Da    PI: 10.5126
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G024700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83.1e-182761135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  Sevir.9G024700.1.p 27 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 61
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-141960No hitNo description
SMARTSM004014.8E-152173IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-142561IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.84E-142661No hitNo description
PfamPF003205.2E-162761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDSSVEKQGS GSPDPDERPA AGEPKACTEC HTTKTPLWRG GPCGPMSLCN ACGIRYRKKR  60
REAMGLDANK AAGGEQQQQQ QRKKKAAAAA ASKREREKGA EADEVTVELR TVGFGKEVVL  120
KQRRRMRRRR RLGEEERAAI LLMALSSGVV YA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127QRRRMRR
2123128RRMRRR
3123130RRMRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G024700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280131e-119KJ728013.1 Zea mays clone pUT6148 C2C2-GATA transcription factor (GATA18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981176.11e-106GATA transcription factor 16 isoform X1
TrEMBLK4AG851e-105K4AG85_SETIT; Uncharacterized protein
STRINGSi037892m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.17e-18GATA transcription factor 23