PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G257700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 174aa    MW: 18336.7 Da    PI: 10.6909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00155981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C  Cg++F +   L  H  +H
  Sevir.8G257700.1.p 59 FRCRTCGRCFATFQALGGHRTSH 81
                        89**********99998888777 PP
2zf-C2H2187.8e-06110132123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg++F++   L  H+r+H
  Sevir.8G257700.1.p 110 HRCNTCGMVFPTGQALGGHMRRH 132
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.0325986IPR007087Zinc finger, C2H2
SMARTSM003550.55981IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-75983IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-759132No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
PfamPF139124.5E-12109134IPR007087Zinc finger, C2H2
SMARTSM003550.0071110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDNVATATAR NSTAADGTNR RLLLLLSLSP ASKVIAKQAV GKQHHRARSG LDGGGGASFR  60
CRTCGRCFAT FQALGGHRTS HSRPRVRADG LDLLLGARPG RKGAAASDVH RCNTCGMVFP  120
TGQALGGHMR RHRAAFEVAV LETMQATTTV SGLSEEEDDD DARHVSSTLI QFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G257700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.11e-112zinc finger protein ZAT12
SwissprotQ9LX856e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A368SBJ91e-111A0A368SBJ9_SETIT; Uncharacterized protein
STRINGSi027432m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-22C2H2 family protein