PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.8G254800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19477.1 Da PI: 7.3411 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sevir.8G254800.2.p 2 SPQEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.881 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 1.17E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 7.49E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MSPQEERLII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KMSISPSSSS 60 SSLTYQSCLL DTSPIIGMSS GDTHNGSSCV TSALDSTQSS MDAYPMDQIW REIEAPQAPA 120 LLGIAEGKEK TCSSIPCPLP SPAMWDYKCP EIFWKMEDEE IRMLAPSFGY GK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.8G254800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU652463 | 1e-170 | EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | EU670236 | 1e-170 | EU670236.1 Saccharum officinarum MYB transcription factor MYBAS1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136780 | 1e-170 | HM136780.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 1 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM136781 | 1e-170 | HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds. | |||
GenBank | HM136782 | 1e-170 | HM136782.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 3 (MYBAS1) mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387410 | 1e-170 | KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced. | |||
GenBank | KM387411 | 1e-170 | KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 1e-124 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 5e-87 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | K3ZK15 | 1e-124 | K3ZK15_SETIT; Uncharacterized protein | ||||
STRING | Si026803m | 1e-124 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59780.1 | 5e-34 | myb domain protein 59 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.8G254800.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|