PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G213400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28195.6 Da PI: 6.9255 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 178 | 219 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq Sevir.8G213400.1.p 178 AKKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 219 59******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-15 | 166 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-15 | 167 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.415 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-11 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.59E-12 | 178 | 223 | No hit | No description |
Pfam | PF00010 | 4.9E-9 | 179 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEAKCASIWN EESEMIAHLQ SVFWNSSDAD ASLSSPNSST SSCIEPSTLP TALFLPLIGR 60 ESYDTAPFRN TAADWCFDHQ SQAFAPIANA VTGDKRAVRI DDGRKKSTNS NKKARIVAPV 120 LRTLSSSALD DEANNELINH SSSEDDSIGM CEESVVMKQR SSSRGRSRSS KNSQSVYAKK 180 RRERINEKLK TLQQLIPNGT KVDMSTMLEE AVQYVKFLQL QIKLLSSDET WMYAPLAYNH 240 MTIDINMNSS VKQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G213400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980781.1 | 0.0 | transcription factor bHLH139 | ||||
Swissprot | Q8LEG1 | 1e-36 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | K3ZNR2 | 0.0 | K3ZNR2_SETIT; Uncharacterized protein | ||||
STRING | Si028242m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G213400.1.p |