PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G169500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 458aa    MW: 51331.7 Da    PI: 6.5586
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G169500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.3e-12215289190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY+ Y+ evGF ++k  ++++       +++f+C+++g++++ + k         +++ +C+ +l++++++d  w+v+  + eHnH+l+
  Sevir.8G169500.3.p 215 EFYEIYSWEVGFGTKKGDKYRN------SMQEFQCQCQGSNTRVQYK---------TKKKKCQVMLQLHRTTDFGWYVSLHRAEHNHSLF 289
                         6*******************99......5788********9998777.........88899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-7215289IPR004330FAR1 DNA binding domain
PfamPF105512.4E-8412457IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLVDPALNSP LESMGKRRHD RIAAEDVLRG RSHLGVNGEG GPSPMSLQDM VMHASNGMLH  60
PALVVGSTST EDEGCNVHFV DATSVHGFDS SNSDQFGSTK MQEHQFVHVD GMPNGGDSVM  120
GGVTLSGNGN GSGEDAVQCG ISDNETETAT IWVSEMEAEP WPKWKRLPDD APEQRPARLM  180
GAIERDLCNS STRKTKYIFE PTPGMTFDCV VEPQEFYEIY SWEVGFGTKK GDKYRNSMQE  240
FQCQCQGSNT RVQYKTKKKK CQVMLQLHRT TDFGWYVSLH RAEHNHSLFE SYSEKLCWNS  300
HGKIQQSTKN MIRNLRDNNV TLTKVNRIIS SMIGHGGEPP RSSNSIANLC NRIAKEQKDD  360
DVRKTLEVFE ELKKQDPGFQ CSVDYDKVKN KLKILMWCTG RSRSQYACFG DVVTFDTTYC  420
TNIYKMPFGI FVGVNNHFLS IIFAGVLMTN EKSDSFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G169500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S8880.0A0A368S888_SETIT; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-21FAR1-related sequence 3