PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G169500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 449aa    MW: 50476.8 Da    PI: 6.5586
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G169500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.15.2e-12206280190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY+ Y+ evGF ++k  ++++       +++f+C+++g++++ + k         +++ +C+ +l++++++d  w+v+  + eHnH+l+
  Sevir.8G169500.2.p 206 EFYEIYSWEVGFGTKKGDKYRN------SMQEFQCQCQGSNTRVQYK---------TKKKKCQVMLQLHRTTDFGWYVSLHRAEHNHSLF 280
                         6*******************99......5788********9998777.........88899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-8206280IPR004330FAR1 DNA binding domain
PfamPF105512.3E-8403448IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLVDPALNSP LESMGKRRHD RIAAEDVLRG RSHLGVNGED MVMHASNGML HPALVVGSTS  60
TEDEGCNVHF VDATSVHGFD SSNSDQFGST KMQEHQFVHV DGMPNGGDSV MGGVTLSGNG  120
NGSGEDAVQC GISDNETETA TIWVSEMEAE PWPKWKRLPD DAPEQRPARL MGAIERDLCN  180
SSTRKTKYIF EPTPGMTFDC VVEPQEFYEI YSWEVGFGTK KGDKYRNSMQ EFQCQCQGSN  240
TRVQYKTKKK KCQVMLQLHR TTDFGWYVSL HRAEHNHSLF ESYSEKLCWN SHGKIQQSTK  300
NMIRNLRDNN VTLTKVNRII SSMIGHGGEP PRSSNSIANL CNRIAKEQKD DDVRKTLEVF  360
EELKKQDPGF QCSVDYDKVK NKLKILMWCT GRSRSQYACF GDVVTFDTTY CTNIYKMPFG  420
IFVGVNNHFL SIIFAGVLMT NEKSDSFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G169500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S8880.0A0A368S888_SETIT; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-21FAR1-related sequence 3