PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G122800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 416aa    MW: 45535.4 Da    PI: 8.7719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G122800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-112952326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        ++ C++++rtG C++G +CkF+H+
  Sevir.8G122800.2.p 29 EPDCSYYMRTGMCRFGMTCKFNHP 52
                        789********************8 PP
2zf-CCCH39.78.4e-137398227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        ++++C+++++tGtCk+G++CkF+H++
  Sevir.8G122800.2.p 73 GQPECQYYLKTGTCKFGATCKFHHPR 98
                        689*********************96 PP
3zf-CCCH36.77e-12120144327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Sevir.8G122800.2.p 120 EKECAYYLRTGQCKFGSTCKFHHPQ 144
                         679********************97 PP
4zf-CCCH39.31e-12281306227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Sevir.8G122800.2.p 281 DQPECQFYMKTGDCKFGAVCKFHHPR 306
                         689*********************96 PP
5zf-CCCH37.63.6e-12326351126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f++r+G Ck+G++CkF H+
  Sevir.8G122800.2.p 326 PGEPICSFYSRYGMCKFGPNCKFDHP 351
                         5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-42653IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2532654IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-72952IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-43253IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-67198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.777199IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-107398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-57799IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619117145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6117146IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9120144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4123143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53279307IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5279306IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4285307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSSKVAEAMW QMNLGEAVEL GPYPERVGEP DCSYYMRTGM CRFGMTCKFN HPADRKLAVA  60
AARMKGEYPQ RSGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN ELGYPFRPNE  120
KECAYYLRTG QCKFGSTCKF HHPQPSTMMV AVRGSGYSPG QSATSPGQHA YQGAVTSWPL  180
SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWSPYTAQI GSSSSDDQQQ TPGAAQYYTG  240
SRQSGTPGMG DQGMFSSYQA GSVPVGLYAV QRENVFPERP DQPECQFYMK TGDCKFGAVC  300
KFHHPRERII PTPNCALSSL GLPLRPGEPI CSFYSRYGMC KFGPNCKFDH PLGTVMFGHA  360
SSPTGEVPTS RRMLAHVPSH PEVSPDSGSG RSRRISHSDS QQIPPGERST EREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G122800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341780.0BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds.
GenBankBT0608430.0BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds.
GenBankBT0642190.0BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds.
GenBankBT0857450.0BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds.
GenBankEU9569840.0EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979251.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A368S8D70.0A0A368S8D7_SETIT; Uncharacterized protein
STRINGSi026440m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]