PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G108400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 346aa    MW: 37669.7 Da    PI: 8.8564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G108400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05258280123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+ksF++  +L  H r+H
  Sevir.8G108400.1.p 258 HVCSKCNKSFPTGQSLGGHKRKH 280
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551307493IPR015880Zinc finger, C2H2-like
PfamPF139120.0437493IPR007087Zinc finger, C2H2
SMARTSM0035573211231IPR015880Zinc finger, C2H2-like
PfamPF139120.054214231IPR007087Zinc finger, C2H2
SuperFamilySSF576674.19E-5257285No hitNo description
SMARTSM003550.028258280IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-10258281IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554258285IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDKRMHEVRS SDRENASDPF DNFEINSDRN VIPSLGQPQI TNMESSGEIS ILENVKMANL  60
DQGINRAVMV GNSTTCGKSF EKIGSLHGHM GSHGREGYKH MRMMAEQPIP VDASQPTVVS  120
LPVPKKKKKR KLKHILEPSR ALVEMSMAPV CHPKFGTATT DLSASVTFSS DAHSSGETAE  180
TREVAEFLTT LVERIRKDTV KVPSPPATEG FVCCNKTFYS THALGGHMSI HNKRKNTLLE  240
DGSAGSSSGS GQRCTSKHVC SKCNKSFPTG QSLGGHKRKH YYEEYKMISP ADGNMKPPIP  300
LPHETVPSSV LAVLPTVENM KPPQLPLASD AVQQSQQAHR LGNET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131PKKKKKRKL
2124130KKKKKRK
3124131KKKKKRKL
4125130KKKKRK
5126131KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G108400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S6E00.0A0A368S6E0_SETIT; Uncharacterized protein
STRINGPavir.Hb01284.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2236947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-15salt tolerance zinc finger