PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G062700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 356aa    MW: 38318.9 Da    PI: 4.7496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G062700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-5091331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtd+elv++yL +k+ g +l +  vi+evd+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+
  Sevir.8G062700.1.p   9 LPPGFRFHPTDDELVNYYLLRKCGGLPLAA-PVIAEVDLYKFDPWNLPEKAMGGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADKP 98 
                         79*************************999.89***************8888999************************************ PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v s   + v +kk Lvfy g+ pkg+kt+W+mheyrl
  Sevir.8G062700.1.p  99 VGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
                         *99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-615164IPR003441NAC domain
PROSITE profilePS5100558.9739164IPR003441NAC domain
PfamPF023654.5E-2610133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDFGGALQLP PGFRFHPTDD ELVNYYLLRK CGGLPLAAPV IAEVDLYKFD PWNLPEKAMG  60
GEKEWYFFSP RDRKYPNGSR PNRAAGAGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK  120
GVKTNWIMHE YRLADVDRSA AARKKTNNNA LRLDDWVLCR IYNKKGVIER YDTVDDDEVA  180
AAAADDVKPA AAKNPRGAAA PMKVEMADYG GYYDDYDLET PSAGMLCFDR PGEAAAMVPA  240
PAPAPAALSP TEPDPDRDSS SVPWTMHTDN SSSGSEHVLS PSPDLPDRDH AESQPGGGAG  300
WWPGGDWGGA AADDGFVVMD DCGSALFGPP SPALFARVDA AAFGDMFAYL QRPPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-7421708174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G062700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699600.0BT069960.1 Zea mays full-length cDNA clone ZM_BFb0347F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978885.10.0NAC domain-containing protein 71
SwissprotQ53NF71e-152NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLK3ZIE00.0K3ZIE0_SETIT; Uncharacterized protein
STRINGSi026342m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-93NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]