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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sevir.8G038000.8.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | NAC | ||||||||
| Protein Properties | Length: 1946aa MW: 219700 Da PI: 6.9979 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 121.1 | 1e-37 | 765 | 897 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85
lppG+rF Pt+eel+++yL+++++g+ ++e++i+ vdiy+++P++L++ + + ++++w+fF++ ++++ +g r+ r+t sgyWka
Sevir.8G038000.8.p 765 LPPGYRFYPTEEELLSFYLRHRLAGTMPQVEHFIPVVDIYRYHPSELQAmagvA--NvgDKEQWFFFCPWAERELHGGRPARTTPSGYWKA 853
79****************************999**************9535532..1335669**************************** PP
NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ ++++g k+t+vfy+grap g+kt+W m+ey++
Sevir.8G038000.8.p 854 AEVASYVYSApANRVIGEKRTMVFYEGRAPMGKKTRWKMNEYKA 897
********9988899***************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52540 | 1.46E-26 | 3 | 156 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 5.8E-33 | 3 | 182 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.80.10.10 | 3.3E-8 | 251 | 455 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52047 | 1.73E-23 | 277 | 453 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 8.1E-8 | 507 | 601 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52047 | 1.73E-23 | 512 | 603 | No hit | No description |
| SuperFamily | SSF101941 | 4.32E-42 | 761 | 924 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 45.271 | 765 | 925 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.1E-19 | 766 | 896 | IPR003441 | NAC domain |
| CDD | cd14798 | 4.99E-10 | 1011 | 1115 | No hit | No description |
| SuperFamily | SSF52540 | 3.93E-50 | 1165 | 1435 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 2.5E-46 | 1183 | 1462 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.1E-17 | 1185 | 1323 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00382 | 0.0061 | 1198 | 1361 | IPR003593 | AAA+ ATPase domain |
| PRINTS | PR00364 | 1.2E-10 | 1201 | 1216 | No hit | No description |
| CDD | cd00009 | 0.0025 | 1202 | 1288 | No hit | No description |
| PRINTS | PR00364 | 1.2E-10 | 1275 | 1289 | No hit | No description |
| PRINTS | PR00364 | 1.2E-10 | 1369 | 1383 | No hit | No description |
| SuperFamily | SSF52058 | 1.09E-22 | 1498 | 1899 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 8.1E-8 | 1560 | 1561 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 8.1E-8 | 1596 | 1633 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 7.2E-7 | 1675 | 1876 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.2E-10 | 1684 | 1700 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1946 aa Download sequence Send to blast |
MYRCFIIIDD IWDIQSWKLI KCALQDSDCR SRVVITTRIF GVATYADDVY DMQPLSPEKS 60 EKLFYARMFA GDGKHLDRPS AETCELFLKK CCGLPLAIIT IASLLANKPE EEWSEVYYSF 120 GFGNTDNYDD VENARRILSF SYYDLPSRLK ACLLYLSTFS ENHMIEKNSL IWMWIAEGFI 180 HAEPGVGLFE LGERYFNELI NRGLIQAEET EYEGYVDACS VNIMVLDLIR SLSTDENFST 240 VLDGRERQKL PRSIARRLLL KCFERHNSSQ LTTNVDVSKV RSLFASQCDF GASFPRFPCL 300 RVLDMINCRA EEGREEGMLD HLWSLLQLRY LGLGLGLIEL PRKVRYLKFL QTLDLRGSFV 360 KELPNGVGLL TQLVCLRSDC ETRVPAGLIG KLTSLQELAI HPTANARMHF VKELGLLREL 420 RVLRTMIDGT SESMGRTLLE SIGNLHKIRY LNIEEAHPSL PSSFGSSPIP STLLFSSPSP 480 SSPMAKTLRE AQRELAFSLL GNCRMTDAGF VTCQHLRFLR LEWIVFSGLP GWINSSLAPN 540 LSYLCLKVLV MKEQDVETLA RLPELRCLKL HSCDTKLLVI KILTENVGYF RNLRTLHLYN 600 TSIWFDPHGS KCRSSSRIES TIMPSLESLS FDVHVRFLKD ATTLFGFDKL LGFENIGRSS 660 LQIVTAYVNC GNARASEVEE VEAALVHAAT VHPKHPTLQT ARLEEDDLLS PYQEVTSPVT 720 KLVDQVKSME VSAAPSLHQT NVDEEPGESS TDRTMGSGSS SDPPLPPGYR FYPTEEELLS 780 FYLRHRLAGT MPQVEHFIPV VDIYRYHPSE LQAMAGVANV GDKEQWFFFC PWAERELHGG 840 RPARTTPSGY WKAAEVASYV YSAPANRVIG EKRTMVFYEG RAPMGKKTRW KMNEYKAADG 900 APLLLAAGAP VRLRNEFRVC RVYISTGTLK SFDCRPLNPA GGVDQALHCY QQQQVQLAPP 960 PPPAAAAAAS QMPAVDGVDQ ALNVSEEHGE SSTEGMTNST QGTMEAPVSS SLGAMGSLFR 1020 KLGILLDPKY PLRSSLKHAI KLLVEDLEEI RDAHMEQLMA DSHNSKAKYW MEEVRELSYD 1080 IEDSIDFMML SHNAANEKPR SIHAPKLRVA RLKIRGLPSM LKLSTRIVRV AELRTLLWEA 1140 SERHARYQLD GCVSKPRSVF SGRSSRITLV YKVVADPIGI EGPKKELTMW LTNQAEQQLK 1200 VLCIFGPAGI GKTTLAKELY RELGGKFDCR AFIRVSRNPD ISRLLQELLY QILRPNKQNL 1260 YACSVQGDIE NIRKHLEDKR YFIVIDDLWE AEAWDIIKNV FPNGSNCSRV IITCEVKNIA 1320 LECSGYHTVD TFEMKPLGSQ DSENLFLDRA FSSDNQFPDP LIFRMLKECG GLPLAIISAA 1380 GLFASLRDNS DIWHQLLQSV LSTLENLSLE DMLKQIVSIC YNNLPQELKT CLLYLTMYPV 1440 GCTIWKDDLL KQWAAEGFIT TTKGNEGVAE NYFNELVKRG MIQPEKINYN NEVLSCTVHH 1500 VVLDLITYKS RQENFITAVD YSRTNAMFLM KARRLSLHYS CAQYATEPEG IRVSQVRSLA 1560 FFGLPRCMPS VIEFKLLRVL ILEFWGNKDD CTSVNLSRIC GLCLLRYLKI SSQIYVELPS 1620 EIQGLKFLEI LEIDARVSAV LNEKMLEIDA KESAVPNDIV HLPGLLHLGI RDGTKLPDRI 1680 GLITSLQTLK CFDLGYNSED NVQSLGELIN LRDLHLTCSK EVSHEHLKRK LVALASSFGR 1740 LANLKSLTLA HGAVGMTMFV DHSSAIFSTP MFLQRLELPP ICTFSRLPEW IGKLRKLCVL 1800 KIVVRVLLRS DIDILTGLPG LTVLSLYVRQ PNAEGVVFNS GEFPVLKYFK YRCSALCIAF 1860 REEALPNLRR LKVCFNFHRD EIYSHMISGV EHLLNLKEIA VRIGAADGGV EESDRRAVES 1920 AFESTIRKHP TFPIYMNVRR FDWVE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 7e-37 | 3 | 1515 | 31 | 718 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sevir.8G038000.8.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004978729.2 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC101767946 | ||||
| TrEMBL | A0A368S5M0 | 0.0 | A0A368S5M0_SETIT; Uncharacterized protein | ||||
| STRING | Si025833m | 0.0 | (Setaria italica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G22380.1 | 4e-52 | NAC domain containing protein 90 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sevir.8G038000.8.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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