PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G038000.7.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 1442aa MW: 162431 Da PI: 7.2438

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G038000.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.6	7.1e-38	261	393	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL+++++g+ ++e++i+ vdiy+++P++L++ + + ++++w+fF++ ++++ +g r+ r+t sgyWka Sevir.8G038000.7.p 261 LPPGYRFYPTEEELLSFYLRHRLAGTMPQVEHFIPVVDIYRYHPSELQAmagvA--NvgDKEQWFFFCPWAERELHGGRPARTTPSGYWKA 349 79**************************999**********9535532..1335669************************ PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ ++++g k+t+vfy+grap g+kt+W m+ey++ Sevir.8G038000.7.p 350 AEVASYVYSApANRVIGEKRTMVFYEGRAPMGKKTRWKMNEYKA 393 ****9988899*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.80.10.10	1.4E-15	8	98	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52047	2.0E-8	8	99	No hit	No description
SuperFamily	SSF101941	2.88E-42	257	420	IPR003441	NAC domain
PROSITE profile	PS51005	45.271	261	421	IPR003441	NAC domain
Pfam	PF02365	7.3E-20	262	392	IPR003441	NAC domain
CDD	cd14798	3.27E-10	507	611	No hit	No description
SuperFamily	SSF52540	2.51E-50	661	931	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.6E-46	679	958	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.1E-17	681	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00382	0.0061	694	857	IPR003593	AAA+ ATPase domain
PRINTS	PR00364	3.8E-11	697	712	No hit	No description
CDD	cd00009	0.00163	698	784	No hit	No description
PRINTS	PR00364	3.8E-11	771	785	No hit	No description
PRINTS	PR00364	3.8E-11	865	879	No hit	No description
SuperFamily	SSF52058	6.46E-23	994	1395	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.4E-15	1087	1376	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	3.8E-11	1180	1196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 1442 aa Download sequence Send to blast
MTDAGFVTCQ HLRFLRLEWI VFSGLPGWIN SSLAPNLSYL CLKVLVMKEQ DVETLARLPE 60 LRCLKLHSCD TKLLVIKILT ENVGYFRNLR TLHLYNTSIW FDPHGSKCRS SSRIESTIMP 120 SLESLSFDVH VRFLKDATTL FGFDKLLGFE NIGRSSLQIV TAYVNCGNAR ASEVEEVEAA 180 LVHAATVHPK HPTLQTARLE EDDLLSPYQE VTSPVTKLVD QVKSMEVSAA PSLHQTNVDE 240 EPGESSTDRT MGSGSSSDPP LPPGYRFYPT EEELLSFYLR HRLAGTMPQV EHFIPVVDIY 300 RYHPSELQAM AGVANVGDKE QWFFFCPWAE RELHGGRPAR TTPSGYWKAA EVASYVYSAP 360 ANRVIGEKRT MVFYEGRAPM GKKTRWKMNE YKAADGAPLL LAAGAPVRLR NEFRVCRVYI 420 STGTLKSFDC RPLNPAGGVD QALHCYQQQQ VQLAPPPPPA AAAAASQMPA VDGVDQALNV 480 SEEHGESSTE GMTNSTQGTM EAPVSSSLGA MGSLFRKLGI LLDPKYPLRS SLKHAIKLLV 540 EDLEEIRDAH MEQLMADSHN SKAKYWMEEV RELSYDIEDS IDFMMLSHNA ANEKPRSIHA 600 PKLRVARLKI RGLPSMLKLS TRIVRVAELR TLLWEASERH ARYQLDGCVS KPRSVFSGRS 660 SRITLVYKVV ADPIGIEGPK KELTMWLTNQ AEQQLKVLCI FGPAGIGKTT LAKELYRELG 720 GKFDCRAFIR VSRNPDISRL LQELLYQILR PNKQNLYACS VQGDIENIRK HLEDKRYFIV 780 IDDLWEAEAW DIIKNVFPNG SNCSRVIITC EVKNIALECS GYHTVDTFEM KPLGSQDSEN 840 LFLDRAFSSD NQFPDPLIFR MLKECGGLPL AIISAAGLFA SLRDNSDIWH QLLQSVLSTL 900 ENLSLEDMLK QIVSICYNNL PQELKTCLLY LTMYPVGCTI WKDDLLKQWA AEGFITTTKG 960 NEGVAENYFN ELVKRGMIQP EKINYNNEVL SCTVHHVVLD LITYKSRQEN FITAVDYSRT 1020 NAMFLMKARR LSLHYSCAQY ATEPEGIRVS QVRSLAFFGL PRCMPSVIEF KLLRVLILEF 1080 WGNKDDCTSV NLSRICGLCL LRYLKISSQI YVELPSEIQG LKFLEILEID ARVSAVLNEK 1140 MLEIDAKESA VPNDIVHLPG LLHLGIRDGT KLPDRIGLIT SLQTLKCFDL GYNSEDNVQS 1200 LGELINLRDL HLTCSKEVSH EHLKRKLVAL ASSFGRLANL KSLTLAHGAV GMTMFVDHSS 1260 AIFSTPMFLQ RLELPPICTF SRLPEWIGKL RKLCVLKIVV RVLLRSDIDI LTGLPGLTVL 1320 SLYVRQPNAE GVVFNSGEFP VLKYFKYRCS ALCIAFREEA LPNLRRLKVC FNFHRDEIYS 1380 HMISGVEHLL NLKEIAVRIG AADGGVEESD RRAVESAFES TIRKHPTFPI YMNVRRFDWV 1440 E*

Sequence ? help Back to Top

Protein Sequence Length: 1442 aa Download sequence Send to blast

MTDAGFVTCQ HLRFLRLEWI VFSGLPGWIN SSLAPNLSYL CLKVLVMKEQ DVETLARLPE  60
LRCLKLHSCD TKLLVIKILT ENVGYFRNLR TLHLYNTSIW FDPHGSKCRS SSRIESTIMP  120
SLESLSFDVH VRFLKDATTL FGFDKLLGFE NIGRSSLQIV TAYVNCGNAR ASEVEEVEAA  180
LVHAATVHPK HPTLQTARLE EDDLLSPYQE VTSPVTKLVD QVKSMEVSAA PSLHQTNVDE  240
EPGESSTDRT MGSGSSSDPP LPPGYRFYPT EEELLSFYLR HRLAGTMPQV EHFIPVVDIY  300
RYHPSELQAM AGVANVGDKE QWFFFCPWAE RELHGGRPAR TTPSGYWKAA EVASYVYSAP  360
ANRVIGEKRT MVFYEGRAPM GKKTRWKMNE YKAADGAPLL LAAGAPVRLR NEFRVCRVYI  420
STGTLKSFDC RPLNPAGGVD QALHCYQQQQ VQLAPPPPPA AAAAASQMPA VDGVDQALNV  480
SEEHGESSTE GMTNSTQGTM EAPVSSSLGA MGSLFRKLGI LLDPKYPLRS SLKHAIKLLV  540
EDLEEIRDAH MEQLMADSHN SKAKYWMEEV RELSYDIEDS IDFMMLSHNA ANEKPRSIHA  600
PKLRVARLKI RGLPSMLKLS TRIVRVAELR TLLWEASERH ARYQLDGCVS KPRSVFSGRS  660
SRITLVYKVV ADPIGIEGPK KELTMWLTNQ AEQQLKVLCI FGPAGIGKTT LAKELYRELG  720
GKFDCRAFIR VSRNPDISRL LQELLYQILR PNKQNLYACS VQGDIENIRK HLEDKRYFIV  780
IDDLWEAEAW DIIKNVFPNG SNCSRVIITC EVKNIALECS GYHTVDTFEM KPLGSQDSEN  840
LFLDRAFSSD NQFPDPLIFR MLKECGGLPL AIISAAGLFA SLRDNSDIWH QLLQSVLSTL  900
ENLSLEDMLK QIVSICYNNL PQELKTCLLY LTMYPVGCTI WKDDLLKQWA AEGFITTTKG  960
NEGVAENYFN ELVKRGMIQP EKINYNNEVL SCTVHHVVLD LITYKSRQEN FITAVDYSRT  1020
NAMFLMKARR LSLHYSCAQY ATEPEGIRVS QVRSLAFFGL PRCMPSVIEF KLLRVLILEF  1080
WGNKDDCTSV NLSRICGLCL LRYLKISSQI YVELPSEIQG LKFLEILEID ARVSAVLNEK  1140
MLEIDAKESA VPNDIVHLPG LLHLGIRDGT KLPDRIGLIT SLQTLKCFDL GYNSEDNVQS  1200
LGELINLRDL HLTCSKEVSH EHLKRKLVAL ASSFGRLANL KSLTLAHGAV GMTMFVDHSS  1260
AIFSTPMFLQ RLELPPICTF SRLPEWIGKL RKLCVLKIVV RVLLRSDIDI LTGLPGLTVL  1320
SLYVRQPNAE GVVFNSGEFP VLKYFKYRCS ALCIAFREEA LPNLRRLKVC FNFHRDEIYS  1380
HMISGVEHLL NLKEIAVRIG AADGGVEESD RRAVESAFES TIRKHPTFPI YMNVRRFDWV  1440
E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j5t_C	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5t_F	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5t_G	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5t_L	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5t_O	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5u_A	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5v_A	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j5w_A	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j6i_C	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j6i_F	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j6i_G	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j6i_L	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
6j6i_O	4e-37	540	1011	31	504	Disease resistance RPP13-like protein 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. At the opposite of cultivars Aichi asahi and Sasanishiki, the cultivars Nipponbare, Mokoto and Hitomebore don't recognize the effector avirulence protein AVR-Pia from M.oryzae. {ECO:0000269\|PubMed:21251109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G038000.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978729.2	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC101767946
Swissprot	Q2R8L1	0.0	RGA5S_ORYSJ; Disease resistance protein RGA5
TrEMBL	A0A368S5M0	0.0	A0A368S5M0_SETIT; Uncharacterized protein
STRING	Si025833m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-52	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Sevir.8G038000.7.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okuyama Y, et al. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. Plant J., 2011. 66(3): p. 467-79 [PMID:21251109]