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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sevir.8G038000.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | NAC | ||||||||
| Protein Properties | Length: 2197aa MW: 247301 Da PI: 7.0201 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 120.8 | 1.2e-37 | 1016 | 1148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83
lppG+rF Pt+eel+++yL+++++g+ ++e++i+ vdiy+++P++L++ + + ++++w+fF++ ++++ +g r+ r+t sgyW
Sevir.8G038000.2.p 1016 LPPGYRFYPTEEELLSFYLRHRLAGTMPQVEHFIPVVDIYRYHPSELQAmagvA--NvgDKEQWFFFCPWAERELHGGRPARTTPSGYW 1102
79****************************999**************9535532..1335669************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
ka v+s+ ++++g k+t+vfy+grap g+kt+W m+ey++
Sevir.8G038000.2.p 1103 KAAEVASYVYSApANRVIGEKRTMVFYEGRAPMGKKTRWKMNEYKA 1148
**********9988899***************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd14798 | 7.42E-17 | 4 | 132 | No hit | No description |
| SuperFamily | SSF52540 | 5.65E-42 | 155 | 407 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.3E-9 | 189 | 261 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 1.6E-32 | 189 | 433 | IPR002182 | NB-ARC |
| SMART | SM00382 | 4.9 | 193 | 343 | IPR003593 | AAA+ ATPase domain |
| Gene3D | G3DSA:3.80.10.10 | 4.8E-8 | 504 | 706 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52047 | 2.12E-23 | 528 | 704 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 6.2E-15 | 761 | 853 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52047 | 2.12E-23 | 763 | 854 | No hit | No description |
| SuperFamily | SSF101941 | 4.97E-42 | 1012 | 1175 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 45.271 | 1016 | 1176 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.2E-19 | 1017 | 1147 | IPR003441 | NAC domain |
| CDD | cd14798 | 7.59E-10 | 1262 | 1366 | No hit | No description |
| SuperFamily | SSF52540 | 4.64E-50 | 1416 | 1686 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.0E-46 | 1434 | 1713 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.6E-17 | 1436 | 1574 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00382 | 0.0061 | 1449 | 1612 | IPR003593 | AAA+ ATPase domain |
| PRINTS | PR00364 | 1.9E-10 | 1452 | 1467 | No hit | No description |
| CDD | cd00009 | 0.00374 | 1453 | 1539 | No hit | No description |
| PRINTS | PR00364 | 1.9E-10 | 1526 | 1540 | No hit | No description |
| PRINTS | PR00364 | 1.9E-10 | 1620 | 1634 | No hit | No description |
| SuperFamily | SSF52058 | 1.33E-22 | 1749 | 2150 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 6.2E-15 | 1842 | 2131 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.9E-10 | 1935 | 1951 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2197 aa Download sequence Send to blast |
MDLAAGAIGS LLPKLVELLK EEYGLHKDAR KAIESLLREL ESAYAVLREI GDVPPYELDV 60 DELVRLWARD VREASYDMED ALDALFLVPI GGPEPTETSL QEKVGKLFQK SKARRNLSTQ 120 IHDIYEKVDK LAAKRDRYGL DSFVAKPVGA TSIDPRNATR YIRATDLVGI EGPRDELISM 180 LSVGGDVDMS NKKIKIVSVT GSGGLGKTTL AKAVYDQLKP GFDCGAFIPV GRNPDMMKVF 240 KDILINLDKK RYANYSDLNV LDVKKLMEKL KEFVEKKSDC RSRVVITTRI FGVATYADDV 300 YDMQPLSPEK SEKLFYARMF AGDGKHLDRP SAETCELFLK KCCGLPLAII TIASLLANKP 360 EEEWSEVYYS FGFGNTDNYD DVENARRILS FSYYDLPSRL KACLLYLSTF SENHMIEKNS 420 LIWMWIAEGF IHAEPGVGLF ELGERYFNEL INRGLIQAEE TEYEGYVDAC SVNIMVLDLI 480 RSLSTDENFS TVLDGRERQK LPRSIARRLL LKCFERHNSS QLTTNVDVSK VRSLFASQCD 540 FGASFPRFPC LRVLDMINCR AEEGREEGML DHLWSLLQLR YLGLGLGLIE LPRKVRYLKF 600 LQTLDLRGSF VKELPNGVGL LTQLVCLRSD CETRVPAGLI GKLTSLQELA IHPTANARMH 660 FVKELGLLRE LRVLRTMIDG TSESMGRTLL ESIGNLHKIR YLNIEEAHPS LPSSFGSSPI 720 PSTLLFSSPS PSSPMAKTLR EAQRELAFSL LGNCRMTDAG FVTCQHLRFL RLEWIVFSGL 780 PGWINSSLAP NLSYLCLKVL VMKEQDVETL ARLPELRCLK LHSCDTKLLV IKILTENVGY 840 FRNLRTLHLY NTSIWFDPHG SKCRSSSRIE STIMPSLESL SFDVHVRFLK DATTLFGFDK 900 LLGFENIGRS SLQIVTAYVN CGNARASEVE EVEAALVHAA TVHPKHPTLQ TARLEEDDLL 960 SPYQEVTSPV TKLVDQVKSM EVSAAPSLHQ TNVDEEPGES STDRTMGSGS SSDPPLPPGY 1020 RFYPTEEELL SFYLRHRLAG TMPQVEHFIP VVDIYRYHPS ELQAMAGVAN VGDKEQWFFF 1080 CPWAERELHG GRPARTTPSG YWKAAEVASY VYSAPANRVI GEKRTMVFYE GRAPMGKKTR 1140 WKMNEYKAAD GAPLLLAAGA PVRLRNEFRV CRVYISTGTL KSFDCRPLNP AGGVDQALHC 1200 YQQQQVQLAP PPPPAAAAAA SQMPAVDGVD QALNVSEEHG ESSTEGMTNS TQGTMEAPVS 1260 SSLGAMGSLF RKLGILLDPK YPLRSSLKHA IKLLVEDLEE IRDAHMEQLM ADSHNSKAKY 1320 WMEEVRELSY DIEDSIDFMM LSHNAANEKP RSIHAPKLRV ARLKIRGLPS MLKLSTRIVR 1380 VAELRTLLWE ASERHARYQL DGCVSKPRSV FSGRSSRITL VYKVVADPIG IEGPKKELTM 1440 WLTNQAEQQL KVLCIFGPAG IGKTTLAKEL YRELGGKFDC RAFIRVSRNP DISRLLQELL 1500 YQILRPNKQN LYACSVQGDI ENIRKHLEDK RYFIVIDDLW EAEAWDIIKN VFPNGSNCSR 1560 VIITCEVKNI ALECSGYHTV DTFEMKPLGS QDSENLFLDR AFSSDNQFPD PLIFRMLKEC 1620 GGLPLAIISA AGLFASLRDN SDIWHQLLQS VLSTLENLSL EDMLKQIVSI CYNNLPQELK 1680 TCLLYLTMYP VGCTIWKDDL LKQWAAEGFI TTTKGNEGVA ENYFNELVKR GMIQPEKINY 1740 NNEVLSCTVH HVVLDLITYK SRQENFITAV DYSRTNAMFL MKARRLSLHY SCAQYATEPE 1800 GIRVSQVRSL AFFGLPRCMP SVIEFKLLRV LILEFWGNKD DCTSVNLSRI CGLCLLRYLK 1860 ISSQIYVELP SEIQGLKFLE ILEIDARVSA VLNEKMLEID AKESAVPNDI VHLPGLLHLG 1920 IRDGTKLPDR IGLITSLQTL KCFDLGYNSE DNVQSLGELI NLRDLHLTCS KEVSHEHLKR 1980 KLVALASSFG RLANLKSLTL AHGAVGMTMF VDHSSAIFST PMFLQRLELP PICTFSRLPE 2040 WIGKLRKLCV LKIVVRVLLR SDIDILTGLP GLTVLSLYVR QPNAEGVVFN SGEFPVLKYF 2100 KYRCSALCIA FREEALPNLR RLKVCFNFHR DEIYSHMISG VEHLLNLKEI AVRIGAADGG 2160 VEESDRRAVE SAFESTIRKH PTFPIYMNVR RFDWVE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 4e-39 | 3 | 1766 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sevir.8G038000.2.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004978729.2 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC101767946 | ||||
| TrEMBL | A0A368S5M0 | 0.0 | A0A368S5M0_SETIT; Uncharacterized protein | ||||
| STRING | Si025833m | 0.0 | (Setaria italica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G22380.1 | 6e-52 | NAC domain containing protein 90 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sevir.8G038000.2.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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