 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sevir.8G038000.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
| Family | NAC | ||||||||
| Protein Properties | Length: 2221aa MW: 250220 Da PI: 6.9775 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 120.8 | 1.2e-37 | 1040 | 1172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83
lppG+rF Pt+eel+++yL+++++g+ ++e++i+ vdiy+++P++L++ + + ++++w+fF++ ++++ +g r+ r+t sgyW
Sevir.8G038000.1.p 1040 LPPGYRFYPTEEELLSFYLRHRLAGTMPQVEHFIPVVDIYRYHPSELQAmagvA--NvgDKEQWFFFCPWAERELHGGRPARTTPSGYW 1126
79****************************999**************9535532..1335669************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
ka v+s+ ++++g k+t+vfy+grap g+kt+W m+ey++
Sevir.8G038000.1.p 1127 KAAEVASYVYSApANRVIGEKRTMVFYEGRAPMGKKTRWKMNEYKA 1172
**********9988899***************************85 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd14798 | 7.65E-17 | 4 | 132 | No hit | No description |
| SuperFamily | SSF52540 | 2.41E-53 | 155 | 431 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 6.5E-17 | 189 | 314 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 9.3E-50 | 189 | 457 | IPR002182 | NB-ARC |
| SMART | SM00382 | 0.029 | 193 | 331 | IPR003593 | AAA+ ATPase domain |
| PRINTS | PR00364 | 1.3E-12 | 196 | 211 | No hit | No description |
| PRINTS | PR00364 | 1.3E-12 | 273 | 287 | No hit | No description |
| PRINTS | PR00364 | 1.3E-12 | 366 | 380 | No hit | No description |
| SuperFamily | SSF52047 | 2.12E-23 | 552 | 728 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 8.5E-9 | 569 | 730 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.3E-12 | 620 | 636 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 7.0E-15 | 785 | 877 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52047 | 2.12E-23 | 787 | 878 | No hit | No description |
| SuperFamily | SSF101941 | 5.1E-42 | 1036 | 1199 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 45.271 | 1040 | 1200 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.3E-19 | 1041 | 1171 | IPR003441 | NAC domain |
| CDD | cd14798 | 7.97E-10 | 1286 | 1390 | No hit | No description |
| SuperFamily | SSF52540 | 4.7E-50 | 1440 | 1710 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.0E-46 | 1458 | 1737 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.6E-17 | 1460 | 1598 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00382 | 0.0061 | 1473 | 1636 | IPR003593 | AAA+ ATPase domain |
| CDD | cd00009 | 0.00371 | 1477 | 1563 | No hit | No description |
| SuperFamily | SSF52058 | 1.33E-22 | 1773 | 2174 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 7.0E-15 | 1866 | 2155 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2221 aa Download sequence Send to blast |
MDLAAGAIGS LLPKLVELLK EEYGLHKDAR KAIESLLREL ESAYAVLREI GDVPPYELDV 60 DELVRLWARD VREASYDMED ALDALFLVPI GGPEPTETSL QEKVGKLFQK SKARRNLSTQ 120 IHDIYEKVDK LAAKRDRYGL DSFVAKPVGA TSIDPRNATR YIRATDLVGI EGPRDELISM 180 LSVGGDVDMS NKKIKIVSVT GSGGLGKTTL AKAVYDQLKP GFDCGAFIPV GRNPDMMKVF 240 KDILINLDKK RYANYSDLNV LDVKKLMEKL KEFVEKKRCF IIIDDIWDIQ SWKLIKCALQ 300 DSDCRSRVVI TTRIFGVATY ADDVYDMQPL SPEKSEKLFY ARMFAGDGKH LDRPSAETCE 360 LFLKKCCGLP LAIITIASLL ANKPEEEWSE VYYSFGFGNT DNYDDVENAR RILSFSYYDL 420 PSRLKACLLY LSTFSENHMI EKNSLIWMWI AEGFIHAEPG VGLFELGERY FNELINRGLI 480 QAEETEYEGY VDACSVNIMV LDLIRSLSTD ENFSTVLDGR ERQKLPRSIA RRLLLKCFER 540 HNSSQLTTNV DVSKVRSLFA SQCDFGASFP RFPCLRVLDM INCRAEEGRE EGMLDHLWSL 600 LQLRYLGLGL GLIELPRKVR YLKFLQTLDL RGSFVKELPN GVGLLTQLVC LRSDCETRVP 660 AGLIGKLTSL QELAIHPTAN ARMHFVKELG LLRELRVLRT MIDGTSESMG RTLLESIGNL 720 HKIRYLNIEE AHPSLPSSFG SSPIPSTLLF SSPSPSSPMA KTLREAQREL AFSLLGNCRM 780 TDAGFVTCQH LRFLRLEWIV FSGLPGWINS SLAPNLSYLC LKVLVMKEQD VETLARLPEL 840 RCLKLHSCDT KLLVIKILTE NVGYFRNLRT LHLYNTSIWF DPHGSKCRSS SRIESTIMPS 900 LESLSFDVHV RFLKDATTLF GFDKLLGFEN IGRSSLQIVT AYVNCGNARA SEVEEVEAAL 960 VHAATVHPKH PTLQTARLEE DDLLSPYQEV TSPVTKLVDQ VKSMEVSAAP SLHQTNVDEE 1020 PGESSTDRTM GSGSSSDPPL PPGYRFYPTE EELLSFYLRH RLAGTMPQVE HFIPVVDIYR 1080 YHPSELQAMA GVANVGDKEQ WFFFCPWAER ELHGGRPART TPSGYWKAAE VASYVYSAPA 1140 NRVIGEKRTM VFYEGRAPMG KKTRWKMNEY KAADGAPLLL AAGAPVRLRN EFRVCRVYIS 1200 TGTLKSFDCR PLNPAGGVDQ ALHCYQQQQV QLAPPPPPAA AAAASQMPAV DGVDQALNVS 1260 EEHGESSTEG MTNSTQGTME APVSSSLGAM GSLFRKLGIL LDPKYPLRSS LKHAIKLLVE 1320 DLEEIRDAHM EQLMADSHNS KAKYWMEEVR ELSYDIEDSI DFMMLSHNAA NEKPRSIHAP 1380 KLRVARLKIR GLPSMLKLST RIVRVAELRT LLWEASERHA RYQLDGCVSK PRSVFSGRSS 1440 RITLVYKVVA DPIGIEGPKK ELTMWLTNQA EQQLKVLCIF GPAGIGKTTL AKELYRELGG 1500 KFDCRAFIRV SRNPDISRLL QELLYQILRP NKQNLYACSV QGDIENIRKH LEDKRYFIVI 1560 DDLWEAEAWD IIKNVFPNGS NCSRVIITCE VKNIALECSG YHTVDTFEMK PLGSQDSENL 1620 FLDRAFSSDN QFPDPLIFRM LKECGGLPLA IISAAGLFAS LRDNSDIWHQ LLQSVLSTLE 1680 NLSLEDMLKQ IVSICYNNLP QELKTCLLYL TMYPVGCTIW KDDLLKQWAA EGFITTTKGN 1740 EGVAENYFNE LVKRGMIQPE KINYNNEVLS CTVHHVVLDL ITYKSRQENF ITAVDYSRTN 1800 AMFLMKARRL SLHYSCAQYA TEPEGIRVSQ VRSLAFFGLP RCMPSVIEFK LLRVLILEFW 1860 GNKDDCTSVN LSRICGLCLL RYLKISSQIY VELPSEIQGL KFLEILEIDA RVSAVLNEKM 1920 LEIDAKESAV PNDIVHLPGL LHLGIRDGTK LPDRIGLITS LQTLKCFDLG YNSEDNVQSL 1980 GELINLRDLH LTCSKEVSHE HLKRKLVALA SSFGRLANLK SLTLAHGAVG MTMFVDHSSA 2040 IFSTPMFLQR LELPPICTFS RLPEWIGKLR KLCVLKIVVR VLLRSDIDIL TGLPGLTVLS 2100 LYVRQPNAEG VVFNSGEFPV LKYFKYRCSA LCIAFREEAL PNLRRLKVCF NFHRDEIYSH 2160 MISGVEHLLN LKEIAVRIGA ADGGVEESDR RAVESAFEST IRKHPTFPIY MNVRRFDWVE 2220 * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 3e-47 | 3 | 1790 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sevir.8G038000.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004978729.2 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC101767946 | ||||
| TrEMBL | A0A368S5M0 | 0.0 | A0A368S5M0_SETIT; Uncharacterized protein | ||||
| STRING | Si025833m | 0.0 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5435 | 6 | 6 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G22380.1 | 6e-52 | NAC domain containing protein 90 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sevir.8G038000.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|