PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G011700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 224aa    MW: 25021.6 Da    PI: 8.7621
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.8e-2242103259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                         dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Sevir.8G011700.1.p  42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCS 103
                         8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2331103IPR003657WRKY domain
SuperFamilySSF1182902.22E-2234104IPR003657WRKY domain
PROSITE profilePS5081116.06536105IPR003657WRKY domain
SMARTSM007741.6E-3341104IPR003657WRKY domain
PfamPF031064.4E-2542102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALDSVPPYP CELGSNRAAR TQHQRIRKDE RTWTSDTYAP YDDGHQWRKY GEKKLSNSNF  60
PRFYYRCTYK NDMKCPATKQ VQQKDTSDPP LFSVTYFNHH TCSTSSAPIG GTRDTTAQSS  120
SRKAVSICFS PQTASEQHTF LTSSALPQSP SIHSYRANQQ PERNPYASQF QWTDTSSPTS  180
SGPFMMEIDN VSGASASSSS SGALPRTLLP IGQSRCIEYF HFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1542102968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G011700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586290.0KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978524.11e-165probable WRKY transcription factor 64
TrEMBLK3ZJS71e-164K3ZJS7_SETIT; Uncharacterized protein
STRINGSi026831m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-21WRKY DNA-binding protein 55