PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G010900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 182aa    MW: 19569.6 Da    PI: 4.5286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G010900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201463255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr+++ +g+++AeIrdp     +  kr++lg+f+taeeAa+ ++aa+ +l+g
  Sevir.8G010900.1.p 14 RFRGVRQRP-WGKYAAEIRDP-----TlgKRIWLGTFDTAEEAAAVYDAAAIRLRG 63
                        69*******.**********9.....555*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-301472IPR001471AP2/ERF domain
PROSITE profilePS5103223.3271471IPR001471AP2/ERF domain
SMARTSM003802.5E-391477IPR001471AP2/ERF domain
PfamPF008476.7E-121463IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-221473IPR016177DNA-binding domain
PRINTSPR003671.7E-101526IPR001471AP2/ERF domain
CDDcd000181.85E-152270No hitNo description
PRINTSPR003671.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDNDRPGQGR GRRRFRGVRQ RPWGKYAAEI RDPTLGKRIW LGTFDTAEEA AAVYDAAAIR  60
LRGRRAVTNF PASTSSSSSS VASSAVSPAP SPAGSTTIPP IPPPAQSSSQ AETSSASPPS  120
TQSSSVVDAD EEVAGMRWFE DEPFELLEFC LPPAPTARQW EFGELGDLDD LFSPEPEIFR  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-231377469ATERF1
3gcc_A4e-231377469ATERF1
5wx9_A2e-22179180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G010900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703523.11e-126ethylene-responsive transcription factor ERF096-like
TrEMBLA0A368S3291e-124A0A368S329_SETIT; Uncharacterized protein
STRINGPavir.J11205.1.p6e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-09ERF domain protein 10