PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G007400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 386aa    MW: 41982 Da    PI: 8.9118
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G007400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53161491129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee+++ yL +k+ + +++  ++i evd++k+ePwdLp+k+k +ekew+fF+++d ky+tg r+nratk+gyWkatgkd++
  Sevir.8G007400.1.p  16 LPPGFRFHPTDEEVITSYLLQKLLNPSFDP-QAIGEVDLNKCEPWDLPSKAKMGEKEWFFFCHKDMKYPTGMRTNRATKEGYWKATGKDRD 105
                         79*************************999.88***************99999************************************** PP

                 NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++       ++elvg+kktLvfy grap+g+kt+Wvmhe+rle
  Sevir.8G007400.1.p 106 IFKPaaaggaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149
                         ***99998888888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6112175IPR003441NAC domain
PROSITE profilePS5100556.25416175IPR003441NAC domain
PfamPF023654.0E-2717148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVERSVKSEH GGGLFLPPGF RFHPTDEEVI TSYLLQKLLN PSFDPQAIGE VDLNKCEPWD  60
LPSKAKMGEK EWFFFCHKDM KYPTGMRTNR ATKEGYWKAT GKDRDIFKPA AAGGAGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNSKLR FNPKDEWVVC KVHHKNGEAK  180
KPAEEYSAGT PNVSSVISDD AGEGDDHFLD SMINSMYFNS AGSSLPSTTN VNAAAPHNAD  240
YNPISCTVNP ISSTFLTTAS TTQQASAICT RSSLWPNSAA PRSSSSGYSS SWNMLHADHN  300
QAMGSYNLHH QAMVAKALGG VTSPNFAGVL PSSSVTAGFL QQNSVCMPQQ KLGNYRESYA  360
TNLTSSSAST TGPAAKNLGD GLVRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-531418118174NAC domain-containing protein 19
3swm_B1e-531418118174NAC domain-containing protein 19
3swm_C1e-531418118174NAC domain-containing protein 19
3swm_D1e-531418118174NAC domain-containing protein 19
3swp_A1e-531418118174NAC domain-containing protein 19
3swp_B1e-531418118174NAC domain-containing protein 19
3swp_C1e-531418118174NAC domain-containing protein 19
3swp_D1e-531418118174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G007400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978484.10.0NAC domain-containing protein 77
SwissprotQ5CD171e-114NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A368S3280.0A0A368S328_SETIT; Uncharacterized protein
STRINGSi026649m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-74Arabidopsis NAC domain containing protein 87