PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G330800.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 487aa    MW: 55062.7 Da    PI: 9.2627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G330800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09353394347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE e++ + v++ G+g Wk  a ++g  +++ ++k+ w+  
  Sevir.7G330800.4.p 353 KWTPEEYEIIRRFVEKNGTG-WKELATELG--KSEIHVKDTWRRM 394
                         8*******************.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-6277348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-6278339IPR009057Homeodomain-like
CDDcd001670.00386280346No hitNo description
PROSITE profilePS500905.32280346IPR017877Myb-like domain
PROSITE profilePS5129410.234348399IPR017930Myb domain
SMARTSM007170.0084350397IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-8352408IPR009057Homeodomain-like
CDDcd001670.00194353395No hitNo description
Gene3DG3DSA:1.10.10.601.4E-9353404IPR009057Homeodomain-like
PfamPF139212.0E-10354412No hitNo description
SuperFamilySSF466895.45E-5396468IPR009057Homeodomain-like
PROSITE profilePS500908.084396464IPR017877Myb-like domain
SMARTSM007170.022400466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-8405465IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MERVSAAEKV VIGSKGEKKG HRSKKDKGKR KGKKDKAQGH GGDGYGSIQS DDMNHSVEIE  60
QAEVLAEMAE KPCLEHAEDI MSKSDVKEDR KKKKKDKEAD TISQKQILDA SDVSVGSGYV  120
ERNMGKGEHD SMSKKGKRKH RDGETSLNGS CDDQIVSRGD KKKKRNERSI TLEEGNEADM  180
SMMGQKTKGK KKRGNERDNV GVDLSQNIPA GNGNSCNKEK KTSKDDNDGG KSKKVNVAHG  240
KDKGKRVSFT DDVEVFKIDG GGGDEEGDGS GDSELVHGQR FTHEEDVKLM EAIQKYSEIN  300
QLGEKGLEMI RECKKYPETR GCWAEIAKSL PHRPVMAVYK RARILLYRSD ERKWTPEEYE  360
IIRRFVEKNG TGWKELATEL GKSEIHVKDT WRRMKPKNLK KGTWTQDEYQ NLFDLVNLDL  420
RVKAHQKIAX THRQLRDNIS WEAISEKLTT RNNKDCCLKW YQQLASPLVK EGNWADIDDY  480
LLMEAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894DRKKKKK
28995RKKKKKD
38996RKKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G330800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977530.10.0DNA-binding protein REB1 isoform X1
RefseqXP_004977531.10.0DNA-binding protein REB1 isoform X1
TrEMBLK3Y6B10.0K3Y6B1_SETIT; Uncharacterized protein
STRINGSi009752m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.16e-67MYB_related family protein