PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G330800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 516aa    MW: 59032.1 Da    PI: 6.9812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G330800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09301342347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE e++ + v++ G+g Wk  a ++g  +++ ++k+ w+  
  Sevir.7G330800.2.p 301 KWTPEEYEIIRRFVEKNGTG-WKELATELG--KSEIHVKDTWRRM 342
                         8*******************.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-6225296IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-6226286IPR009057Homeodomain-like
CDDcd001670.00631228294No hitNo description
PROSITE profilePS500905.32228294IPR017877Myb-like domain
PROSITE profilePS5129410.234296347IPR017930Myb domain
SMARTSM007170.0084298345IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-8300360IPR009057Homeodomain-like
CDDcd001670.00313301343No hitNo description
Gene3DG3DSA:1.10.10.601.5E-9301352IPR009057Homeodomain-like
PfamPF139212.2E-10302360No hitNo description
PROSITE profilePS500908.084344412IPR017877Myb-like domain
SMARTSM007170.022348414IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-8353413IPR009057Homeodomain-like
SuperFamilySSF466891.25E-7392470IPR009057Homeodomain-like
PROSITE profilePS500907.793414467IPR017877Myb-like domain
SMARTSM007177.1418469IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNHSVEIEQA EVLAEMAEKP CLEHAEDIMS KSDVKEDRKK KKKDKEADTI SQKQILDASD  60
VSVGSGYVER NMGKGEHDSM SKKGKRKHRD GETSLNGSCD DQIVSRGDKK KKRNERSITL  120
EEGNEADMSM MGQKTKGKKK RGNERDNVGV DLSQNIPAGN GNSCNKEKKT SKDDNDGGKS  180
KKVNVAHGKD KGKRVSFTDD VEVFKIDGGG GDEEGDGSGD SELVHGQRFT HEEDVKLMEA  240
IQKYSEINQL GEKGLEMIRE CKKYPETRGC WAEIAKSLPH RPVMAVYKRA RILLYRSDER  300
KWTPEEYEII RRFVEKNGTG WKELATELGK SEIHVKDTWR RMKPKNLKKG TWTQDEYQNL  360
FDLVNLDLRV KAHQKIAXTH RQLRDNISWE AISEKLTTRN NKDCCLKWYQ QLASPLVKEG  420
NWADIDDYLL MEALQKGDAV CFEDVDWERL LDHRSGELCR QRWNQMVRMI GGHREKPFIE  480
QVEVLARRYC PEMLDYRKPE ASDLSPDELA GESDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642DRKKKKK
23743RKKKKKD
33744RKKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G330800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977530.10.0DNA-binding protein REB1 isoform X1
RefseqXP_004977531.10.0DNA-binding protein REB1 isoform X1
TrEMBLA0A368S2240.0A0A368S224_SETIT; Uncharacterized protein
STRINGSi009752m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-95MYB_related family protein