PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G317300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 40179.1 Da PI: 8.4382 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 3.9e-53 | 16 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdee+++ yL +k + +++ ++i evd++k+ePwdLp+k+k +ekew+fF+++d ky+tg r+nratk+gyWkatgkd+e Sevir.7G317300.1.p 16 LPPGFRFHPTDEEVITSYLLEKFLNPSFDP-QAIGEVDLNKCEPWDLPSKAKMGEKEWFFFCHKDMKYPTGMRTNRATKEGYWKATGKDRE 105 79*************************999.88***************99999************************************** PP NAM 92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ ++elvg+kktLvfy grap+g+kt+Wvmhe+rle Sevir.7G317300.1.p 106 IFKPaaaagaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149 ***98888888888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-60 | 12 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-27 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MVERSVKSEH GGGLFLPPGF RFHPTDEEVI TSYLLEKFLN PSFDPQAIGE VDLNKCEPWD 60 LPSKAKMGEK EWFFFCHKDM KYPTGMRTNR ATKEGYWKAT GKDREIFKPA AAAGAGRELV 120 GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNTKLR FNPKDEWVVC KVHHKNGEAK 180 KPAEEYSAST PNVSSVISDD AGEGDDFLDS MINPMYFNNA GSLPTSTTTV NAAPPQNADY 240 AISSTAAGAT TGTTSSFVNL PNYGFNDTTS INNLHQVALA NSAAPRSSFS SSWNMLHADH 300 NQAMGSYNLH HQAMVAKALG GVISPNFAGG LPESSVTGIL QQNSVGMPQQ KLPGNYGEFY 360 ANHLKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 14 | 181 | 18 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G317300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 0.0 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 1e-118 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | K3Y876 | 0.0 | K3Y876_SETIT; Uncharacterized protein | ||||
STRING | Si010417m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 7e-75 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G317300.1.p |