PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G317200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 40836.5 Da PI: 6.7078 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.8e-51 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+ Sevir.7G317200.1.p 11 LPAGFRFHPTDEELIVHYLMNQASSLPCPV-PIIAEVNIYQCNPWDLPAKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKA 100 799***************************.88***************8877899************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ls+ ++e++g+kk Lvfy g+ pkg+ktdW+mheyrl Sevir.7G317200.1.p 101 ILSTpTSENIGVKKALVFYGGKPPKGTKTDWIMHEYRL 138 **9989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-63 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-26 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MPIASSRLPN LPAGFRFHPT DEELIVHYLM NQASSLPCPV PIIAEVNIYQ CNPWDLPAKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKA ILSTPTSENI GVKKALVFYG 120 GKPPKGTKTD WIMHEYRLTG ANKTTKRRGS SMRLDDWVLC RIYKKSNNFQ FSDPDQEGST 180 VEEESLNNNM NSTSAASPKS DANDHNDDQF QFQPTTMSMS KSYSITDLLN TIDYSALSQL 240 LDAPAAAEPP LIYPTTTQTH QSLNYNNNVM NNNSHFNLPQ AADACPDYVA PNNCNGLKRK 300 RVMTMDGAES SFDDGSRKLL KLLPSDSRSS GHSHFVGSTS SYCNQQLVDT SGFQCSSLLS 360 YPFIEMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-73 | 10 | 170 | 14 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G317200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN673545 | 0.0 | JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977420.1 | 0.0 | NAC domain-containing protein 67 isoform X2 | ||||
TrEMBL | A0A220QT68 | 0.0 | A0A220QT68_SETIT; NAC domain-containing protein 110 | ||||
STRING | Si010410m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-84 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G317200.1.p |