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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sevir.7G306200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
GRAS |
| Protein Properties |
Length: 478aa MW: 51588.2 Da PI: 4.6676 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.7G306200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 193.9 | 1e-59 | 110 | 475 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel......aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseela 79
+lL++ A+av+s+d a+a+L+rl +l + + p la yf+++L++r+++ + + ++ ++ ++++
Sevir.7G306200.1.p 110 SDLLVAGARAVASQDSISASAILSRLDDLipgvpyR----SchhaaasPSDHLACYFARGLRSRISGAR--TERHAAAAPA----PENRMP 190
679************************998754442....233334449******************33..3333333333....356899 PP
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger.Lak 167
a+++++e+sP++kf+h+taNqaIlea++ + vH++D+++++G+QW++L+ La ++p + +T+v+ ++ ++ + ++ r L++
Sevir.7G306200.1.p 191 AYRMLQELSPFIKFAHFTANQAILEATADDPGVHVVDLNVGEGVQWASLMSDLARHGGKPFH--LTAVVTAAGAesDTAGAHPMAARwLSE 279
******************************************************86555545..566666444345666666666555*** PP
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFle 255
fAe+l++pf+ + + edl+ + + + g +++V++ ++ sl + ++L vk l Pk+v+++eqe + ++ ++F+e
Sevir.7G306200.1.p 280 FAESLNLPFRSL--HLRGEEDLHGFTASGNGGGSVIVSCDTTDKSYS----SLIRLQMQLLGSVKILHPKLVILIEQElfrIGRSPAPFAE 364
*******98755..55777888888888888********99554443....4444556********************5444556679*** PP
GRAS 256 rflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
f+e l++++a+++sle+ + vE+e lg+ ++++v + g+ + + e GF++ +ls++++ q k+l +
Sevir.7G306200.1.p 365 FFCEVLQHFAAMLESLESCFCDGGygACLGLVEKETLGPMVEDAVGQYGSL---------TGGAVAELEGFRTCELSSFNVVQGKMLAGLF 446
****************999988877788899*******************8.........224567889********************** PP
GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ +g+ v +e+g l l+W++rpL+svS+Wr
Sevir.7G306200.1.p 447 G-RGFGVVQEEGRLALCWNSRPLTSVSVWR 475
*.***************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 478 aa
Download sequence Send
to blast |
METMSYPCSP LISFPTQHEE SSYLLWSPQV LIPLSLENGD GDADPSSDHH QQQDHEVMDM 60
LIQEANRLPL QDELSNGDPL FTGFDQRREG QENGSLLAVQ EEFMAESSLS DLLVAGARAV 120
ASQDSISASA ILSRLDDLIP GVPYRSCHHA AASPSDHLAC YFARGLRSRI SGARTERHAA 180
AAPAPENRMP AYRMLQELSP FIKFAHFTAN QAILEATADD PGVHVVDLNV GEGVQWASLM 240
SDLARHGGKP FHLTAVVTAA GAESDTAGAH PMAARWLSEF AESLNLPFRS LHLRGEEDLH 300
GFTASGNGGG SVIVSCDTTD KSYSSLIRLQ MQLLGSVKIL HPKLVILIEQ ELFRIGRSPA 360
PFAEFFCEVL QHFAAMLESL ESCFCDGGYG ACLGLVEKET LGPMVEDAVG QYGSLTGGAV 420
AELEGFRTCE LSSFNVVQGK MLAGLFGRGF GVVQEEGRLA LCWNSRPLTS VSVWRPV*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL713906 | 3e-59 | AL713906.3 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 3e-59 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
