PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G302700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 362aa    MW: 38502.3 Da    PI: 9.8187
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G302700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.47.1e-127399127
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCG 27
                        C  Cg+tkT++WR gp g++tLCn CG
  Sevir.7G302700.1.p 73 CGDCGVTKTSQWRTGPMGPRTLCNTCG 99
                        99************************9 PP
2GATA611.5e-19193227135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++Tp+WR+gp+g+ tLCnaCGl+yr ++l
  Sevir.7G302700.1.p 193 CVHCGSSETPQWREGPEGPATLCNACGLRYRQRRL 227
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.0E-567120IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-969108No hitNo description
Gene3DG3DSA:3.30.50.106.2E-872101IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-77299No hitNo description
PROSITE profilePS501149.3027399IPR000679Zinc finger, GATA-type
PfamPF003208.6E-97399IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.822187223IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-14187239No hitNo description
SMARTSM004018.8E-20187241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-16191226IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-15192240No hitNo description
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
PfamPF003202.0E-17193227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPGGGGTERA REGRLAGAVS WMAALLLAAV VAGRDAAVPR KKRGPRVRAE TSRWWSFRLP  60
VPPPPATPRA GTCGDCGVTK TSQWRTGPMG PRTLCNTCGR RRWAAGEQWG EPRRRRRATT  120
PTTVSDQPPP PPPDGPVWEG PLPEGYRTAR RNAAKGSSPS PAPATATTDS DKPAPQNKKK  180
NKAAAAAASE KQCVHCGSSE TPQWREGPEG PATLCNACGL RYRQRRLLPE YRPQASPTFD  240
KENHASMHSE VLELRQQSKN KQKQQQPPAL AQPQPMDDTQ QDVDHLMPPP PPPLPRCVAN  300
DLRVGATDGD SANKASGSGA AVASTDPVGE ASSLDPFLLD GPAAPMVVDE PCWMIAGSST  360
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199116RRRWAAGEQWGEPRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G302700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702967.11e-176myosin-1
TrEMBLK3Y7R80.0K3Y7R8_SETIT; Uncharacterized protein
STRINGSi010259m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-24GATA transcription factor 12