PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.7G235200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 279aa MW: 30789.3 Da PI: 9.2974 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 19 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Sevir.7G235200.1.p 19 KPRLRWTPDLHQRFVDAVDKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 73 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-32 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.891 | 16 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-16 | 19 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-25 | 19 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 21 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-21 | 117 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MMEGRYGGCG GGAMSRDPKP RLRWTPDLHQ RFVDAVDKLG GPDKATPKSV LRLMGMKGLT 60 LYHLKSHLQK YRLGKQGKKS TGLELANGGG FAAPGLSFPT PTPIPGVPAE GKNTGEMPLA 120 DALRYQIQVQ RKLQEQLEVQ KKLQMRIEAQ GKYLKAILEK AERNISSDVN APSDNIESTR 180 SQLMDFNLAL SGFMDNATRV CEENNEQLVK ALSDDKHKDN NLGFQLYQVG CQGAKEVKWT 240 PKTEDLLQLD LNIKGGYDLS SRGMQACEVD LKINQQMI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.7G235200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976682.1 | 0.0 | myb family transcription factor PHL11 | ||||
TrEMBL | K3Y9A2 | 0.0 | K3Y9A2_SETIT; Uncharacterized protein | ||||
STRING | Si010794m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-53 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.7G235200.1.p |