PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G203600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 320aa    MW: 33353 Da    PI: 7.4772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G203600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05526223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ C+++F ++  L  H+r H
  Sevir.7G203600.1.p  5 TCKLCSRRFASPRALAGHMRAH 26
                        6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66427IPR007087Zinc finger, C2H2
PfamPF138941.8E-4526No hitNo description
SuperFamilySSF576675.15E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.15E-7173197No hitNo description
PfamPF139121.3E-10177202IPR007087Zinc finger, C2H2
SMARTSM0035541178198IPR015880Zinc finger, C2H2-like
SMARTSM003550.77241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683241263IPR007087Zinc finger, C2H2
PfamPF139125.5E-11241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSIAA AKSQISSASS ASTSIAAGGG GGVEDDADAK  60
KPSPIQGHAL REKPKRRVRL AESDFSDRES ETTDYYSPDA KRSHDGSGDA EPVSSVSDGD  120
TPVEDVALSL MMLSRDSWPA PPPPSYYSYY RADSDDEGDA RRPAVAAAAA AAQKRTRYEC  180
PACKKVFRSY QALGGHRASN VRGGRGGCCA PPLSNPPPPA HLRPLPECDG GEEDPTKAQP  240
HECPYCFRLF PSGQALGGHK RSHLCSGAAA AAAAAPGADP LSVATKSLGF IDLNLPAPFD  300
DVEHSAVSDP FLSPKPAGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G203600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976448.10.0zinc finger protein ZAT1
TrEMBLK3Y8S30.0K3Y8S3_SETIT; Uncharacterized protein
STRINGSi010615m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-25C2H2-like zinc finger protein