PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G194500.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 739aa    MW: 79519.1 Da    PI: 6.1478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G194500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.51.1e-3092176187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Sevir.7G194500.5.p  92 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 176
                         8*********************************************************************866665..******985 PP
2trihelix108.83.6e-34485570187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r +++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Sevir.7G194500.5.p 485 RWPKTEVHALIQLRMDLDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 570
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53885149IPR017877Myb-like domain
SMARTSM007171.9E-489151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-490149IPR009057Homeodomain-like
CDDcd122032.56E-2891156No hitNo description
PfamPF138376.0E-2291177No hitNo description
SMARTSM007178.2E-4482544IPR001005SANT/Myb domain
PfamPF138371.2E-23484571No hitNo description
PROSITE profilePS500907.352484542IPR017877Myb-like domain
CDDcd122035.23E-29485549No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MQQQQHQDGG GSQYGAAPPD MGPFSPPAAS GPMPLSSRPP SATQPPPQQQ QQQPRVTYEE  60
LAAVSGAGAG GFDDEMLGGS GGGGSSGASS NRWPREETQA LIRIRSEMDA TFRDATLKGP  120
LWEDVSRKLA DLGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FDELEALHAA  180
APQPQPQQQL PPASSAQPLH AFAVPVSAPP PMSSMPPPPP GPMQPAPISS AGPAPVPAAA  240
PMELPPAQQP LNLQGLSFSS MSDSESDDES EDDDMTAETG GSQDHLGKRK RGGGAGGSKK  300
MMSFFEGLMQ QVVQRQEEMQ HRFLETMEKR EAERTAREEA WRRQEVARLN REQEQLAQER  360
AAAASRDAAI INFLQRIGGQ SVQPPAAVAI PMPVQTPPPP KQPPRQPQHP PPPSPQATTP  420
QSKPISAAPL QQQPQETAAH RDAGTPRSAP PTSSASLELA PPVTTEQHVD SGLGGGDGGA  480
ASSSRWPKTE VHALIQLRMD LDMRYQETGP KGPLWEEISS GMRRLGYNRS SKRCKEKWEN  540
INKYYKKVKE SNKKRPEDSK TCPYFHQLEA IYNRKHLRSI GAASASSVAI AGAPPALPAE  600
QANPTRQELE GKNINDDKRN NGGSGAGAQE PNSNGEKAPA PPAAFDADSG MKKPEDIVRE  660
LNEQPPREFT TDETDSDEMG DEYTDGEEGE DDGKMQYRIQ FQRPNSGGTN SAPPAPAPTT  720
AAAPATSAPT STFLAVVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G194500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344790.10.0uncharacterized LOC100279868 isoform 2
TrEMBLA0A3L6PWB50.0A0A3L6PWB5_PANMI; Uncharacterized protein
STRINGSi012121m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-40GT-2-like 1