PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G171800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 389aa    MW: 41975.1 Da    PI: 5.2473
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G171800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-29192246155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k r+rWt+e+H+rFv+av+qLGG e+A Pk+il++m+v+gLt+e+vkSHLQkY+l
  Sevir.7G171800.1.p 192 KVRRRWTTEMHDRFVDAVNQLGGCENAKPKAILDIMNVEGLTREQVKSHLQKYKL 246
                         679**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.671189249IPR017930Myb domain
SuperFamilySSF466899.86E-18191248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28191247IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23192247IPR006447Myb domain, plants
PfamPF002494.0E-9194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MALQSLPAST GAPCSTSVAS SSSTFSTVIV HGRFPNVTPS IVHSLNTEIW SSDPISYSGV  60
SEQLLGGNYP VLPAEATHSA DQLGDLLNNN DIGVEKLPDC GPVREPNESD DRDEWLRCLV  120
TGGLDDIITA DMTLNYPQMA ESAPVSSYLN SETRQDEHIV HQLVSVPTIP GQLYPTVSPP  180
ATINVHSPLR TKVRRRWTTE MHDRFVDAVN QLGGCENAKP KAILDIMNVE GLTREQVKSH  240
LQKYKLAQVR HRPSEVAGTS VDTATSNEGI PSDVQIRIQE FALQVQIEFQ KKLHEMVERT  300
RRDLLEIHRS VLEKHVMSLH ELEERQNLNT DRSILHLLPS PAAGAAAPPS ALSAGGSIGV  360
CGEGSRTAAL VEDVQASEAG SLGNKAGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-18192250260Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G171800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683961.10.0protein PHOSPHATE STARVATION RESPONSE 2-like
TrEMBLA0A368RW930.0A0A368RW93_SETIT; Uncharacterized protein
STRINGPavir.J07757.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.31e-24G2-like family protein