PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G29000.3 | ||||||||
Common Name | F3F24.100, PHL1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 370aa MW: 41423.1 Da PI: 5.4353 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.7 | 5.4e-33 | 188 | 242 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ AT5G29000.3 188 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRT 242 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.486 | 185 | 245 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-17 | 186 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 186 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-23 | 188 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.8E-11 | 190 | 241 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.1E-22 | 276 | 322 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MNNPVPCQSV SGGNSGGYLF PSSSGYCNVS AVLPHGRNLQ NQPPVSTVPR DRLAMQDCPL 60 IAQSSLINHH PQEFIDPLHE FFDFSDHVPV QNLQAESSGV RVDSSVELHK KSEWQDWADQ 120 LISVDDGSEP NWSELLGDSS SHNPNSEIPT PFLDVPRLDI TANQQQQMVS SEDQLSGRNS 180 SSSVATSKQR MRWTPELHEA FVEAVNQLGG SERATPKAVL KLLNNPGLTI YHVKSHLQKY 240 RTARYKPETS EVTGEPQEKK MTSIEDIKSL DMKTSVEITQ ALRLQMEVQK RLHEQLEIQR 300 SLQLQIEKQG RYLQMMFEKQ QKIQDNKSSS SEASPKQCNG SFAEVEVGLE TLTGDQNESA 360 SASRKRVRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42568124 | 0.0 | ||||
Genevisible | 246724_at | 0.0 | ||||
Expression Atlas | AT5G29000 | - | ||||
AtGenExpress | AT5G29000 | - | ||||
ATTED-II | AT5G29000 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G29000.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No effect on phosphate starvation responsiveness, due to the redundancy with PHR1. {ECO:0000269|PubMed:20838596}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G29000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 0.0 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 0.0 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078629.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_568512.3 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_851090.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A178ULC5 | 0.0 | A0A178ULC5_ARATH; PHL1 | ||||
TrEMBL | A0A178ULG0 | 0.0 | A0A178ULG0_ARATH; PHL1 | ||||
TrEMBL | Q94AL7 | 0.0 | Q94AL7_ARATH; Uncharacterized protein At5g29000 (Fragment) | ||||
STRING | AT5G29000.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT5G29000.3 |
Entrez Gene | 833026 |
iHOP | AT5G29000 |
wikigenes | AT5G29000 |