PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G145100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 804aa    MW: 91487.9 Da    PI: 9.1945
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G145100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.84.9e-2053138190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCk +++vk +  +++wev  +eleHnH+++
  Sevir.7G145100.1.p  53 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKSMMVVKFNAnENHWEVVFVELEHNHPCN 138
                         6****************99988..9999**************99887...8999****************9999**************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1853138IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24262355IPR018289MULE transposase domain
PfamPF044341.0E-6532575IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.78543579IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MDALHSDPYS RSSLQPYRDV PVSFENNNTV LDKHGIVSPR VGMTFETVDL AYQFYLEYGY  60
RAGFGVSKRT SHSVDGVKYR ATFVCYKGGI ARIKPGLKAR RRLVAKTGCK SMMVVKFNAN  120
ENHWEVVFVE LEHNHPCNPE MVRFMMCFKD LPDWQREHRP FNAKTRLNPK IHSGRGRPPN  180
QNKDFMVRSF AQSNYSIEGA GKAGKLRFAE GDVEALLVFF DKMQAQNSNF FYNWDMDDEG  240
RLKNVCWVDA RSRVAYQHFC DVICFDTVYL TYQFVIPLVA FLGINHHGQF VLLGCGLLGD  300
ESPETFAWLF KKWLKCMNDK APEAIITTHS RPVVKAVSEV FPNTRHRYNL WHIMKELPEM  360
SGRVEDKEAI SLRMKKVVYD TITSADFERE WVEMINQYNL HDNRWLTTLF EERAKWVPAY  420
VKDTFWAGIS TVRRSERLEA FFDGYITPET TIKTFIEQFD TAMKLRSDRE AYDDFRSFQQ  480
RPQVLSGLLF EEQFANVYTI NMFQKFQDQL KQLMNVNCTE VSRSGSVVTY TVTVIGKERK  540
FDYRVMYNSA EKEVWCICRS FQFKGILCSH ALAVLRQELV MLIPPKYILD RWRKDYKCPE  600
EPKETPISPN AAKATGKGTK PDNVQEDKVD NLYKHGHQYF ADIVEMGATD PDAMEYVLSV  660
MKEAKEKMRK FEESRKEKRP GESPVSAGKK GAKSSKPSST EDVGNGASMS TPTTAAVTTV  720
TVVPSAPMAA APTMMAMAPA SAAMPQGMFL VPMHPHPMVF PPFAPAVQPA VAAPVAPPAA  780
PATNVGDTAT NTSKKRKKRK GKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1793797KKRKK
2793799KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G145100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975958.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLK3Y5940.0K3Y594_SETIT; Uncharacterized protein
STRINGSi009382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-117FAR1-related sequence 6