PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G133100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 38696 Da PI: 8.5618 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.4 | 3.2e-54 | 34 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv++ ++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk+ Sevir.7G133100.3.p 34 LPPGFRFHPTDEELITHYLARKVADARFAA-FAVSEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKD 123 79*************************999.56***************8888899************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg kktLvfy+grapkgek+ Wvmheyrl Sevir.7G133100.3.p 124 IFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 159 ***.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-64 | 24 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.666 | 34 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-29 | 35 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MYKCFRTGAS VGATAADKPA LSAMEQELHQ PMELPPGFRF HPTDEELITH YLARKVADAR 60 FAAFAVSEAD LNKCEPWDLP SLAKMGEKEW YFFCLKDRKY PTGLRTNRAT EAGYWKATGK 120 DKDIFRGKAL VGSKKTLVFY TGRAPKGEKS GWVMHEYRLH GKLHGAMPKP ASKNEWVLCR 180 VFKKSLIVGV GVPPAARRGA MEMAAKMDDM AAISHLPPLM DVSGAAANPA AAHVTCFSNA 240 LEGQSFLNQT AAPQVAAAAA TDHLGLASSS PFLSSFAQYG SLHHGGVSLV QLLESSGYAG 300 GGGLPDMPKQ QQQPAPPCKG GERERLSASQ DTGLTSDVHP EISSSSGQRF DHEQLWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 32 | 184 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 32 | 184 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 32 | 184 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 32 | 184 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 32 | 184 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 32 | 184 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 32 | 184 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G133100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060770 | 0.0 | BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds. | |||
GenBank | BT063543 | 0.0 | BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds. | |||
GenBank | BT084493 | 0.0 | BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975858.1 | 0.0 | NAC domain-containing protein 92 isoform X1 | ||||
TrEMBL | A0A368RWM7 | 0.0 | A0A368RWM7_SETIT; Uncharacterized protein | ||||
STRING | Si010553m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-88 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G133100.3.p |