PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G133100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 36397.4 Da PI: 8.2335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.6 | 2.8e-54 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv++ ++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk+ Sevir.7G133100.2.p 11 LPPGFRFHPTDEELITHYLARKVADARFAA-FAVSEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKD 100 79*************************999.56***************8888899************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg kktLvfy+grapkgek+ Wvmheyrl Sevir.7G133100.2.p 101 IFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 136 ***.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-64 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.666 | 11 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-29 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MEQELHQPME LPPGFRFHPT DEELITHYLA RKVADARFAA FAVSEADLNK CEPWDLPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKALVGS KKTLVFYTGR 120 APKGEKSGWV MHEYRLHGKL HGAMPKPASK NEWVLCRVFK KSLIVGVGVP PAARRGAMEM 180 AAKMDDMAAI SHLPPLMDVS GAAANPAAAH VTCFSNALEG QSFLNQTAAP QVAAAAATDH 240 LGLASSSPFL SSFAQYGSLH HGGVSLVQLL ESSGYAGGGG LPDMPKQQQQ PAPPCKGGER 300 ERLSASQDTG LTSDVHPEIS SSSGQRFDHE QLWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 9 | 161 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 9 | 161 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 9 | 161 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 9 | 161 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 9 | 161 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 9 | 161 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 9 | 161 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G133100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060770 | 0.0 | BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds. | |||
GenBank | BT063543 | 0.0 | BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds. | |||
GenBank | BT084493 | 0.0 | BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds. | |||
GenBank | JX428530 | 0.0 | JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975858.1 | 0.0 | NAC domain-containing protein 92 isoform X1 | ||||
TrEMBL | A0A368RWM7 | 0.0 | A0A368RWM7_SETIT; Uncharacterized protein | ||||
STRING | Si010553m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-88 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G133100.2.p |