PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G133100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 361aa    MW: 38763.2 Da    PI: 8.4655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.3e-54361611128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL++kv++ ++ +  +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk+
  Sevir.7G133100.1.p  36 LPPGFRFHPTDEELITHYLARKVADARFAA-FAVSEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKD 125
                         79*************************999.56***************8888899************************************ PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +++lvg kktLvfy+grapkgek+ Wvmheyrl
  Sevir.7G133100.1.p 126 IFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 161
                         ***.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6426186IPR003441NAC domain
PROSITE profilePS5100558.66636186IPR003441NAC domain
PfamPF023655.2E-2937161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLLLLALKTG ASVGATAADK PALSAMEQEL HQPMELPPGF RFHPTDEELI THYLARKVAD  60
ARFAAFAVSE ADLNKCEPWD LPSLAKMGEK EWYFFCLKDR KYPTGLRTNR ATEAGYWKAT  120
GKDKDIFRGK ALVGSKKTLV FYTGRAPKGE KSGWVMHEYR LHGKLHGAMP KPASKNEWVL  180
CRVFKKSLIV GVGVPPAARR GAMEMAAKMD DMAAISHLPP LMDVSGAAAN PAAAHVTCFS  240
NALEGQSFLN QTAAPQVAAA AATDHLGLAS SSPFLSSFAQ YGSLHHGGVS LVQLLESSGY  300
AGGGGLPDMP KQQQQPAPPC KGGERERLSA SQDTGLTSDV HPEISSSSGQ RFDHEQLWGY  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-523418615165NO APICAL MERISTEM PROTEIN
1ut4_B1e-523418615165NO APICAL MERISTEM PROTEIN
1ut7_A1e-523418615165NO APICAL MERISTEM PROTEIN
1ut7_B1e-523418615165NO APICAL MERISTEM PROTEIN
4dul_A1e-523418615165NAC domain-containing protein 19
4dul_B1e-523418615165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00496DAPTransfer from AT5G07680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G133100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607700.0BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975858.10.0NAC domain-containing protein 92 isoform X1
TrEMBLA0A368RWM70.0A0A368RWM7_SETIT; Uncharacterized protein
STRINGSi010553m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-88NAC domain containing protein 100