PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G129300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 281aa MW: 31496.9 Da PI: 6.7018 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.3 | 2.4e-21 | 56 | 116 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k++++pr Y+rC+++ +C++ k v++ ++dp v+e+tY eH+++ Sevir.7G129300.1.p 56 DGHLWRKYGQKVIKDAPYPRLYFRCSYRedrHCQASKLVQQVtHDDPPVFEVTYMYEHTCN 116 9**************************99999*******98615789************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-21 | 40 | 116 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-21 | 47 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-30 | 54 | 117 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.868 | 56 | 118 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-23 | 56 | 115 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MALPPRLKRK QQPSQPYGQG GVVFGLSTPE PAPRDGRKRR KDKHTWIKHT LTPYFDGHLW 60 RKYGQKVIKD APYPRLYFRC SYREDRHCQA SKLVQQVTHD DPPVFEVTYM YEHTCNAAPV 120 PTPGVESEDE PPACGGGLVL SFGASSRSAG GHHHRDTRIQ LQEERQQYHQ SPSPFLTMNL 180 HFSNSSQQHA FPSSVLRPPT TSWSSSSFPI IESSSSPTPP WVDDDDDILT WDWDTSTYDL 240 DDHLQLGDNV QFSGSSFSRK PDGSALANLG MGIEVEGVTF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-14 | 56 | 115 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 41 | RKRRKD |
2 | 36 | 42 | RKRRKDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G129300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978045.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A368RUM4 | 0.0 | A0A368RUM4_SETIT; Uncharacterized protein | ||||
STRING | Si012735m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66560.1 | 4e-19 | WRKY DNA-binding protein 64 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G129300.1.p |